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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Spinach variant bound to DFHBI-1T

Results of the assignment of 68 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
017l0z_G_G1_G2AAAAA00690.11 AA00
027l0z_G_G2_G3AAAAA08870.21 AA08
037l0z_G_G3_A4AAAAA00740.21 AA00
047l0z_G_A4_G5AAAAA08840.25 AA08
057l0z_G_G5_U6AAAAA00870.17 AA00
067l0z_G_U6_A7AAAAA00920.12 AA00
077l0z_G_A7_C8AAAAA00640.17 AA00
087l0z_G_C8_G9AAAAA00610.12 AA00
097l0z_G_G9_G10AAAAA08620.25 AA08
107l0z_G_G10_U11AAAAA08850.23 AA08
117l0z_G_U11_G12AAAAA08710.28 AA08
127l0z_G_G12_A13AAAAA08630.26 AA08
137l0z_G_A13_G14AAAAA00670.23 AA00
147l0z_G_G14_G15ICLIC01620.30 IC01
157l0z_G_G15_G16BB2BB07460.41 BB07
167l0z_G_G16_U17NANNANT00.60 OP21
177l0z_G_U17_C18NANNANT00.69 OP21
187l0z_G_C18_G19AAwAA01870.11 AA01
197l0z_G_G19_G20AAAAA00890.14 AA00
207l0z_G_G20_G21AAAAA00750.23 AA00
217l0z_G_G21_U22AAAAA00860.20 AA00
227l0z_G_U22_C23AAAAA00870.20 AA00
237l0z_G_C23_C24AAAAA00930.21 AA00
247l0z_G_C24_A25AAAAA00930.10 AA00
257l0z_G_A25_G26AAAAA00960.09 AA00
267l0z_G_G26_U27AAAAA00820.16 AA00
277l0z_G_U27_A28AAAAA08720.19 AA08
287l0z_G_A28_G29AAwAA01840.25 AA01
297l0z_G_G29_G30AAAAA08880.20 AA08
307l0z_G_G30_U31AAAAA00810.19 AA00
317l0z_G_U31_A32OPNOP09570.30 OP09
327l0z_G_A32_C33NANNANT00.81 OP12
337l0z_G_C33_G34NANNANT00.77 ZZ2S
347l0z_G_G34_C35NANNANT00.83 AAS1
357l0z_G_C35_C36AAAAA00800.20 AA00
367l0z_G_C36_U37AAAAA00960.14 AA00
377l0z_G_U37_A38AAAAA00970.10 AA00
387l0z_G_A38_C39AAAAA00900.09 AA00
397l0z_G_C39_U40AAAAA00890.15 AA00
407l0z_G_U40_G41AAAAA00650.20 AA00
417l0z_G_G41_U42ICLIC01480.34 IC01
427l0z_G_U42_U43NANNANT00.77 OP21
437l0z_G_U43_G44NANNANT00.91 OP31
447l0z_G_G44_A45A-BAB04850.17 AB04
457l0z_G_A45_G46NANNANT01.30 BB2S
467l0z_G_G46_U47NANNANT00.81 IC04
477l0z_G_U47_A48NANNANT01.38 OP21
487l0z_G_A48_G49NANNANT00.84 OP17
497l0z_G_G49_A50NANNANT00.82 OP04
507l0z_G_A50_G51NANNANT01.34 BB1S
517l0z_G_G51_U52NANNANT00.95 OP25
527l0z_G_U52_G53NANNANT02.04 OP17
537l0z_G_G53_U54NANNANT01.88 OPS1
547l0z_G_U54_G55OPNOP07260.36 OP07
557l0z_G_G55_G56AAAAA00370.32 AA00
567l0z_G_G56_G57AAAAA00620.34 AA00
577l0z_G_G57_C58AAAAA00780.22 AA00
587l0z_G_C58_U59AAAAA00500.33 AA00
597l0z_G_U59_C60AAAAA08850.20 AA08
607l0z_G_C60_C61AAAAA00870.15 AA00
617l0z_G_C61_G62AAAAA00760.18 AA00
627l0z_G_G62_U63AAAAA00730.14 AA00
637l0z_G_U63_A64AAAAA00670.23 AA00
647l0z_G_A64_C65NANNANT01.20 OP24
657l0z_G_C65_U66AAwAA11850.23 AA11
667l0z_G_U66_C67AAAAA08730.33 AA08
677l0z_G_C67_C68AAAAA00670.20 AA00
687l0z_G_C68_C69AAwAA01260.38 AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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