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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of nucleosome particle in the presence of human testis-specific histone variant, hTh2b

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0015gt3_I_DA1_DT2NANNANT00.48 BB03
0025gt3_I_DT2_DC3NANNANT00.63 BB08
0035gt3_I_DC3_DA4BBBBB00420.38 BB00
0045gt3_I_DA4_DA5BBBBB00610.19 BB00
0055gt3_I_DA5_DT6NANNANT00.28 BB02
0065gt3_I_DT6_DA7BBBBB00700.25 BB00
0075gt3_I_DA7_DT8BBBBB00250.22 BB00
0085gt3_I_DT8_DC9BBwBB02490.23 BB02
0095gt3_I_DC9_DC10NANNANT00.32 BB15
0105gt3_I_DC10_DA11BBwBB02200.34 BB02
0115gt3_I_DA11_DC12BBBBB00230.19 BB00
0125gt3_I_DC12_DC13BBwBB02620.27 BB02
0135gt3_I_DC13_DT14BBBBB00580.29 BB00
0145gt3_I_DT14_DG15B12BB04740.31 BB04
0155gt3_I_DG15_DC16NANNANT00.34 BB15
0165gt3_I_DC16_DA17NANNANT00.44 BB07
0175gt3_I_DA17_DG18B12BB04450.30 BB04
0185gt3_I_DG18_DA19B12BB04610.19 BB04
0195gt3_I_DA19_DT20BBwBB02490.28 BB02
0205gt3_I_DT20_DT21miBBB15530.23 BB15
0215gt3_I_DT21_DC22BBBBB00300.24 BB00
0225gt3_I_DC22_DT23BBwBB02620.24 BB02
0235gt3_I_DT23_DA24BBBBB00190.24 BB00
0245gt3_I_DA24_DC25BBwBB03460.42 BB03
0255gt3_I_DC25_DC26NANNANT00.58 BB16
0265gt3_I_DC26_DA27BB2BB07700.26 BB07
0275gt3_I_DA27_DA28BBBBB00820.14 BB00
0285gt3_I_DA28_DA29BB2BB08910.28 BB08
0295gt3_I_DA29_DA30BBBBB00600.37 BB00
0305gt3_I_DA30_DG31BBBBB00450.19 BB00
0315gt3_I_DG31_DT32BBwBB02850.28 BB02
0325gt3_I_DT32_DG33BBBBB00460.23 BB00
0335gt3_I_DG33_DT34miBBB13380.31 BB13
0345gt3_I_DT34_DA35BBBBB00680.38 BB00
0355gt3_I_DA35_DT36NANNANT00.34 BB02
0365gt3_I_DT36_DT37NANNANT00.49 BB02
0375gt3_I_DT37_DT38NANNANT00.45 BB15
0385gt3_I_DT38_DG39BB2BB07400.35 BB07
0395gt3_I_DG39_DG40NANNANT00.44 BB02
0405gt3_I_DG40_DA41BB2BB0770.47 BB07
0415gt3_I_DA41_DA42BBBBB00170.29 BB00
0425gt3_I_DA42_DA43miBBB15510.24 BB15
0435gt3_I_DA43_DC44BBwBB02370.36 BB02
0445gt3_I_DC44_DT45miBBB13380.42 BB13
0455gt3_I_DT45_DG46NANNANT00.65 BB11
0465gt3_I_DG46_DC47BBwBB02160.34 BB02
0475gt3_I_DC47_DT48BB2BB08290.56 BB08
0485gt3_I_DT48_DC49BBwBB02100.43 BB02
0495gt3_I_DC49_DC50BBBBB00210.38 BB00
0505gt3_I_DC50_DA51miBBB15710.26 BB15
0515gt3_I_DA51_DT52NANNANT00.42 BB02
0525gt3_I_DT52_DC53NANNANT00.37 BB10
0535gt3_I_DC53_DA54NANNANT00.33 BB15
0545gt3_I_DA54_DA55miBBB12400.45 BB12
0555gt3_I_DA55_DA56BBwBB03290.50 BB03
0565gt3_I_DA56_DA57BBBBB00730.19 BB00
0575gt3_I_DA57_DG58miBBB12350.42 BB12
0585gt3_I_DG58_DG59B12BB04240.57 BB04
0595gt3_I_DG59_DC60BBwBB02320.37 BB02
0605gt3_I_DC60_DA61NANNANT00.27 BB00
0615gt3_I_DA61_DT62BBwBB02580.19 BB02
0625gt3_I_DT62_DG63miBBB15710.26 BB15
0635gt3_I_DG63_DT64miBBB15510.28 BB15
0645gt3_I_DT64_DT65BBwBB02360.30 BB02
0655gt3_I_DT65_DC66BBBBB00410.22 BB00
0665gt3_I_DC66_DA67BB2BB07810.15 BB07
0675gt3_I_DA67_DG68B12BB04470.47 BB04
0685gt3_I_DG68_DC69BB2BB07130.24 BB07
0695gt3_I_DC69_DT70B12BB04380.24 BB04
0705gt3_I_DT70_DG71BBBBB00650.29 BB00
0715gt3_I_DG71_DA72BBBBB00810.28 BB00
0725gt3_I_DA72_DA73miBBB15670.24 BB15
0735gt3_I_DA73_DT74BBwBB02700.25 BB02
0745gt3_I_DT74_DT75miBBB15790.14 BB15
0755gt3_I_DT75_DC76BBBBB00800.15 BB00
0765gt3_I_DC76_DA77BB2BB07770.25 BB07
0775gt3_I_DA77_DG78B12BB04420.42 BB04
0785gt3_I_DG78_DC79BB2BB07350.24 BB07
0795gt3_I_DC79_DT80B12BB04490.40 BB04
0805gt3_I_DT80_DG81B12BB04760.23 BB04
0815gt3_I_DG81_DA82BBBBB00830.20 BB00
0825gt3_I_DA82_DA83BBBBB00180.12 BB00
0835gt3_I_DA83_DC84NANNANT00.33 BB02
0845gt3_I_DC84_DA85B12BB04760.15 BB04
0855gt3_I_DA85_DT86BBwBB02650.22 BB02
0865gt3_I_DT86_DG87BBBBB00610.19 BB00
0875gt3_I_DG87_DC88BB2BB07350.37 BB07
0885gt3_I_DC88_DC89BBBBB00650.22 BB00
0895gt3_I_DC89_DT90BB2BB07560.25 BB07
0905gt3_I_DT90_DT91BBBBB00410.18 BB00
0915gt3_I_DT91_DT92BBwBB02300.28 BB02
0925gt3_I_DT92_DT93NANNANT00.27 BB15
0935gt3_I_DT93_DG94NANNANT00.26 BB02
0945gt3_I_DG94_DA95NANNANT00.52 BA05
0955gt3_I_DA95_DT96NANNANT00.47 BB10
0965gt3_I_DT96_DG97BBBBB00300.41 BB00
0975gt3_I_DG97_DG98BBBBB00470.23 BB00
0985gt3_I_DG98_DA99BB2BB07660.32 BB07
0995gt3_I_DA99_DG100BBBBB00730.27 BB00
1005gt3_I_DG100_DC101BB2BB08820.36 BB08
1015gt3_I_DC101_DA102BBBBB00360.53 BB00
1025gt3_I_DA102_DG103miBBB10430.38 BB10
1035gt3_I_DG103_DT104BBwBB02650.23 BB02
1045gt3_I_DT104_DT105BBwBB02580.25 BB02
1055gt3_I_DT105_DT106miBBB15460.26 BB15
1065gt3_I_DT106_DC107BBBBB00750.18 BB00
1075gt3_I_DC107_DC108BB2BB08390.32 BB08
1085gt3_I_DC108_DA109BB2BB07290.39 BB07
1095gt3_I_DA109_DA110BBBBB00700.20 BB00
1105gt3_I_DA110_DA111BBBBB00780.24 BB00
1115gt3_I_DA111_DT112BBBBB00470.26 BB00
1125gt3_I_DT112_DA113BBBBB00600.19 BB00
1135gt3_I_DA113_DC114miBBB13900.30 BB13
1145gt3_I_DC114_DA115BBBBB00380.55 BB00
1155gt3_I_DA115_DC116BBwBB02140.48 BB02
1165gt3_I_DC116_DT117miBBB15720.35 BB15
1175gt3_I_DT117_DT118BBwBB02750.28 BB02
1185gt3_I_DT118_DT119BBBBB00230.26 BB00
1195gt3_I_DT119_DT120BBBBB00660.34 BB00
1205gt3_I_DT120_DG121B12BB04710.36 BB04
1215gt3_I_DG121_DG122BBwBB02210.52 BB02
1225gt3_I_DG122_DT123miBBB15460.32 BB15
1235gt3_I_DT123_DA124BBBBB00530.27 BB00
1245gt3_I_DA124_DG125BBwBB11860.20 BB11
1255gt3_I_DG125_DA126BBBBB00330.44 BB00
1265gt3_I_DA126_DA127BBBBB00560.37 BB00
1275gt3_I_DA127_DT128NANNANT00.52 BB13
1285gt3_I_DT128_DC129BBwBB02270.45 BB02
1295gt3_I_DC129_DT130BBBBB00160.35 BB00
1305gt3_I_DT130_DG131NANNANT00.60 BB08
1315gt3_I_DG131_DC132BBBBB00450.40 BB00
1325gt3_I_DC132_DA133B12BB04310.52 BB04
1335gt3_I_DA133_DG134BBwBB02260.42 BB02
1345gt3_I_DG134_DG135BBwBB02130.33 BB02
1355gt3_I_DG135_DT136miBBB13820.31 BB13
1365gt3_I_DT136_DG137NANNANT00.62 AB03
1375gt3_I_DG137_DG138BBBBB00650.47 BB00
1385gt3_I_DG138_DA139BBwBB03400.33 BB03
1395gt3_I_DA139_DT140BBwBB02110.34 BB02
1405gt3_I_DT140_DA141BBBBB00390.22 BB00
1415gt3_I_DA141_DT142miBBB15880.17 BB15
1425gt3_I_DT142_DT143miBBB15780.17 BB15
1435gt3_I_DT143_DG144BBBBB00610.31 BB00
1445gt3_I_DG144_DA145BBBBB00860.19 BB00
1455gt3_I_DA145_DT146NANNANT00.98 IC03
1465gt3_J_DA147_DT148BBwBB03660.32 BB03
1475gt3_J_DT148_DC149NANNANT00.43 BB02
1485gt3_J_DC149_DA150NANNANT00.34 BB02
1495gt3_J_DA150_DA151BBBBB00530.12 BB00
1505gt3_J_DA151_DT152NANNANT00.34 BB13
1515gt3_J_DT152_DA153NANNANT00.69 BA10
1525gt3_J_DA153_DT154BBBBB00350.26 BB00
1535gt3_J_DT154_DC155BBwBB02300.29 BB02
1545gt3_J_DC155_DC156NANNANT00.29 BB15
1555gt3_J_DC156_DA157NANNANT00.38 BB02
1565gt3_J_DA157_DC158BBBBB00200.21 BB00
1575gt3_J_DC158_DC159BBwBB02710.18 BB02
1585gt3_J_DC159_DT160BBBBB00490.25 BB00
1595gt3_J_DT160_DG161B12BB04800.24 BB04
1605gt3_J_DG161_DC162NANNANT00.31 BB15
1615gt3_J_DC162_DA163NANNANT00.39 BB07
1625gt3_J_DA163_DG164B12BB04300.42 BB04
1635gt3_J_DG164_DA165B12BB05380.30 BB05
1645gt3_J_DA165_DT166BBwBB02430.38 BB02
1655gt3_J_DT166_DT167miBBB15510.20 BB15
1665gt3_J_DT167_DC168BBBBB00310.24 BB00
1675gt3_J_DC168_DT169BBwBB02700.19 BB02
1685gt3_J_DT169_DA170miBBB15730.18 BB15
1695gt3_J_DA170_DC171BBwBB03560.30 BB03
1705gt3_J_DC171_DC172NANNANT00.77 IC06
1715gt3_J_DC172_DA173BBwBB11450.51 BB11
1725gt3_J_DA173_DA174BBBBB00740.23 BB00
1735gt3_J_DA174_DA175BB2BB08910.38 BB08
1745gt3_J_DA175_DA176BBBBB00600.37 BB00
1755gt3_J_DA176_DG177BBBBB00630.21 BB00
1765gt3_J_DG177_DT178BBwBB02860.23 BB02
1775gt3_J_DT178_DG179BBBBB00380.35 BB00
1785gt3_J_DG179_DT180BBwBB02280.34 BB02
1795gt3_J_DT180_DA181BBBBB00640.38 BB00
1805gt3_J_DA181_DT182NANNANT00.41 BB02
1815gt3_J_DT182_DT183NANNANT00.46 BB02
1825gt3_J_DT183_DT184NANNANT00.48 BB15
1835gt3_J_DT184_DG185BB2BB07580.31 BB07
1845gt3_J_DG185_DG186NANNANT00.48 BB15
1855gt3_J_DG186_DA187BB2BB07340.43 BB07
1865gt3_J_DA187_DA188BBBBB00200.26 BB00
1875gt3_J_DA188_DA189miBBB15520.28 BB15
1885gt3_J_DA189_DC190NANNANT00.44 BB13
1895gt3_J_DC190_DT191BBBBB00580.51 BB00
1905gt3_J_DT191_DG192BB2BB07750.23 BB07
1915gt3_J_DG192_DC193BBwBB02530.29 BB02
1925gt3_J_DC193_DT194BB2BB08550.37 BB08
1935gt3_J_DT194_DC195BBwBB02100.60 BB02
1945gt3_J_DC195_DC196BBBBB00170.38 BB00
1955gt3_J_DC196_DA197BBBBB00170.18 BB00
1965gt3_J_DA197_DT198miBBB15790.20 BB15
1975gt3_J_DT198_DC199NANNANT00.35 BB10
1985gt3_J_DC199_DA200NANNANT00.28 BB15
1995gt3_J_DA200_DA201miBBB10520.23 BB10
2005gt3_J_DA201_DA202B12BB04630.13 BB04
2015gt3_J_DA202_DA203BBBBB00770.14 BB00
2025gt3_J_DA203_DG204B12BB04100.34 BB04
2035gt3_J_DG204_DG205BB2BB07750.20 BB07
2045gt3_J_DG205_DC206BBwBB02520.28 BB02
2055gt3_J_DC206_DA207B12BB04240.22 BB04
2065gt3_J_DA207_DT208BBwBB02470.23 BB02
2075gt3_J_DT208_DG209miBBB15720.28 BB15
2085gt3_J_DG209_DT210miBBB15580.25 BB15
2095gt3_J_DT210_DT211BBwBB02260.31 BB02
2105gt3_J_DT211_DC212BBBBB00280.28 BB00
2115gt3_J_DC212_DA213BB2BB07660.26 BB07
2125gt3_J_DA213_DG214BB2BB07710.27 BB07
2135gt3_J_DG214_DC215B12BB04290.47 BB04
2145gt3_J_DC215_DT216BB2BB07710.20 BB07
2155gt3_J_DT216_DG217BBBBB00510.39 BB00
2165gt3_J_DG217_DA218BBBBB00790.14 BB00
2175gt3_J_DA218_DA219miBBB15520.26 BB15
2185gt3_J_DA219_DT220BBwBB02660.17 BB02
2195gt3_J_DT220_DT221miBBB15710.23 BB15
2205gt3_J_DT221_DC222BBBBB00760.15 BB00
2215gt3_J_DC222_DA223BB2BB07770.30 BB07
2225gt3_J_DA223_DG224B12BB04670.22 BB04
2235gt3_J_DG224_DC225B12BB04430.39 BB04
2245gt3_J_DC225_DT226BB2BB07600.21 BB07
2255gt3_J_DT226_DG227BBBBB00550.30 BB00
2265gt3_J_DG227_DA228BBBBB00660.46 BB00
2275gt3_J_DA228_DA229BBBBB00230.18 BB00
2285gt3_J_DA229_DC230NANNANT00.32 BB02
2295gt3_J_DC230_DA231B12BB04810.17 BB04
2305gt3_J_DA231_DT232BBwBB02640.21 BB02
2315gt3_J_DT232_DG233BBBBB00670.22 BB00
2325gt3_J_DG233_DC234B12BB04690.30 BB04
2335gt3_J_DC234_DC235BBBBB00670.29 BB00
2345gt3_J_DC235_DT236BB2BB07590.23 BB07
2355gt3_J_DT236_DT237BBBBB00450.27 BB00
2365gt3_J_DT237_DT238BBwBB02270.35 BB02
2375gt3_J_DT238_DT239NANNANT00.37 BB15
2385gt3_J_DT239_DG240NANNANT00.58 BB07
2395gt3_J_DG240_DA241NANNANT00.46 BB01
2405gt3_J_DA241_DT242NANNANT00.42 BB10
2415gt3_J_DT242_DG243BBwBB02300.29 BB02
2425gt3_J_DG243_DG244BBBBB00410.24 BB00
2435gt3_J_DG244_DA245B12BB04470.31 BB04
2445gt3_J_DA245_DG246BB2BB07730.30 BB07
2455gt3_J_DG246_DC247NANNANT00.45 BB02
2465gt3_J_DC247_DA248NANNANT00.70 BB08
2475gt3_J_DA248_DG249miBBB10390.29 BB10
2485gt3_J_DG249_DT250BBwBB02350.41 BB02
2495gt3_J_DT250_DT251BBwBB02500.28 BB02
2505gt3_J_DT251_DT252miBBB15450.25 BB15
2515gt3_J_DT252_DC253NANNANT00.37 BB13
2525gt3_J_DC253_DC254NANNANT00.66 BB11
2535gt3_J_DC254_DA255BB2BB07450.40 BB07
2545gt3_J_DA255_DA256BBBBB00560.31 BB00
2555gt3_J_DA256_DA257BBBBB00760.20 BB00
2565gt3_J_DA257_DT258B12BB04670.20 BB04
2575gt3_J_DT258_DA259BBBBB00690.27 BB00
2585gt3_J_DA259_DC260NANNANT00.37 BA10
2595gt3_J_DC260_DA261BBwBB16630.39 BB16
2605gt3_J_DA261_DC262BBwBB02100.50 BB02
2615gt3_J_DC262_DT263miBBB15790.35 BB15
2625gt3_J_DT263_DT264miBBB13320.34 BB13
2635gt3_J_DT264_DT265BBBBB00120.31 BB00
2645gt3_J_DT265_DT266NANNANT00.32 BB13
2655gt3_J_DT266_DG267B12BB04160.55 BB04
2665gt3_J_DG267_DG268BBwBB02530.35 BB02
2675gt3_J_DG268_DT269miBBB15500.36 BB15
2685gt3_J_DT269_DA270BBBBB00640.31 BB00
2695gt3_J_DA270_DG271miBBB12240.53 BB12
2705gt3_J_DG271_DA272NANNANT00.35 BB03
2715gt3_J_DA272_DA273BBBBB00750.28 BB00
2725gt3_J_DA273_DT274NANNANT00.43 BB02
2735gt3_J_DT274_DC275BBwBB02260.41 BB02
2745gt3_J_DC275_DT276miBBB15320.32 BB15
2755gt3_J_DT276_DG277NANNANT00.45 BB08
2765gt3_J_DG277_DC278BBBBB00360.40 BB00
2775gt3_J_DC278_DA279BB2BB07130.22 BB07
2785gt3_J_DA279_DG280BBwBB02350.42 BB02
2795gt3_J_DG280_DG281BBwBB02190.41 BB02
2805gt3_J_DG281_DT282NANNANT00.45 BB05
2815gt3_J_DT282_DG283BBBBB00110.51 BB00
2825gt3_J_DG283_DG284BBBBB00780.35 BB00
2835gt3_J_DG284_DA285NANNANT00.60 BB00
2845gt3_J_DA285_DT286BBwBB02120.29 BB02
2855gt3_J_DT286_DA287BBBBB01570.21 BB01
2865gt3_J_DA287_DT288miBBB15730.23 BB15
2875gt3_J_DT288_DT289miBBB15760.24 BB15
2885gt3_J_DT289_DG290BBBBB00690.17 BB00
2895gt3_J_DG290_DA291BBBBB00650.48 BB00
2905gt3_J_DA291_DT292BBwBB02420.34 BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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