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Conformers: ABBIImiBZICOPNSYNN
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Crystal structure of the nucleosome core particle

Results of the assignment of 290 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
0013x1s_I_DA1_DT2BBBBB00500.33 BB00
0023x1s_I_DT2_DC3miBBB10640.22 BB10
0033x1s_I_DC3_DA4BBwBB11550.31 BB11
0043x1s_I_DA4_DA5BBwBB16870.32 BB16
0053x1s_I_DA5_DT6BBBBB00860.17 BB00
0063x1s_I_DT6_DA7miBBB10690.44 BB10
0073x1s_I_DA7_DT8BBBBB00820.17 BB00
0083x1s_I_DT8_DC9B-ABA08610.34 BA08
0093x1s_I_DC9_DC10NANNANT00.51 BA10
0103x1s_I_DC10_DA11A-BAB03690.44 AB03
0113x1s_I_DA11_DC12B-ABA01390.22 BA01
0123x1s_I_DC12_DC13A-BAB05490.19 AB05
0133x1s_I_DC13_DT14BBBBB00350.48 BB00
0143x1s_I_DT14_DG15BB2BB07700.35 BB07
0153x1s_I_DG15_DC16B12BB04500.24 BB04
0163x1s_I_DC16_DA17BB2BB07500.35 BB07
0173x1s_I_DA17_DG18NANNANT00.39 BA08
0183x1s_I_DG18_DA19BBBBB01150.34 BB01
0193x1s_I_DA19_DT20BBBBB01670.15 BB01
0203x1s_I_DT20_DT21BBBBB01720.17 BB01
0213x1s_I_DT21_DC22BBBBB00900.16 BB00
0223x1s_I_DC22_DT23NANNANT00.34 BB02
0233x1s_I_DT23_DA24BBwBB11340.33 BB11
0243x1s_I_DA24_DC25BBwBB03610.33 BB03
0253x1s_I_DC25_DC26BBBBB00400.31 BB00
0263x1s_I_DC26_DA27BB2BB07320.38 BB07
0273x1s_I_DA27_DA28BBBBB00910.17 BB00
0283x1s_I_DA28_DA29B12BB05770.32 BB05
0293x1s_I_DA29_DA30BBBBB00390.39 BB00
0303x1s_I_DA30_DG31BBBBB00840.19 BB00
0313x1s_I_DG31_DT32BBBBB00630.27 BB00
0323x1s_I_DT32_DG33BBBBB00720.26 BB00
0333x1s_I_DG33_DT34BBBBB00780.17 BB00
0343x1s_I_DT34_DA35B12BB04650.23 BB04
0353x1s_I_DA35_DT36BBBBB00630.22 BB00
0363x1s_I_DT36_DT37BBwBB02160.46 BB02
0373x1s_I_DT37_DT38BBBBB00430.27 BB00
0383x1s_I_DT38_DG39B12BB04520.52 BB04
0393x1s_I_DG39_DG40NANNANT00.42 BB08
0403x1s_I_DG40_DA41NANNANT00.51 BB08
0413x1s_I_DA41_DA42BBwBB03820.25 BB03
0423x1s_I_DA42_DA43BBBBB01740.31 BB01
0433x1s_I_DA43_DC44B-ABA05320.32 BA05
0443x1s_I_DC44_DT45A-BAB01840.27 AB01
0453x1s_I_DT45_DG46B12BB04850.29 BB04
0463x1s_I_DG46_DC47BB2BB08680.43 BB08
0473x1s_I_DC47_DT48NANNANT00.64 BA10
0483x1s_I_DT48_DC49NANNANT00.53 BB15
0493x1s_I_DC49_DC50NANNANT00.63 BB15
0503x1s_I_DC50_DA51NANNANT00.53 BB00
0513x1s_I_DA51_DT52NANNANT00.73 BB02
0523x1s_I_DT52_DC53BBBBB00600.51 BB00
0533x1s_I_DC53_DA54B12BB04110.41 BB04
0543x1s_I_DA54_DA55NANNANT00.63 BB02
0553x1s_I_DA55_DA56B12BB04520.24 BB04
0563x1s_I_DA56_DA57BB2BB07170.42 BB07
0573x1s_I_DA57_DG58B12BB04340.36 BB04
0583x1s_I_DG58_DG59NANNANT00.37 BA08
0593x1s_I_DG59_DC60miBBB15270.37 BB15
0603x1s_I_DC60_DA61BBBBB0090.45 BB00
0613x1s_I_DA61_DT62BBBBB00190.24 BB00
0623x1s_I_DT62_DG63B12BB04900.27 BB04
0633x1s_I_DG63_DT64BBBBB00710.29 BB00
0643x1s_I_DT64_DT65BBBBB00710.21 BB00
0653x1s_I_DT65_DC66BBBBB00780.24 BB00
0663x1s_I_DC66_DA67BB2BB07760.17 BB07
0673x1s_I_DA67_DG68BBBBB00780.22 BB00
0683x1s_I_DG68_DC69BB2BB07610.20 BB07
0693x1s_I_DC69_DT70B12BB04490.17 BB04
0703x1s_I_DT70_DG71BBBBB00700.30 BB00
0713x1s_I_DG71_DA72B12BB04160.23 BB04
0723x1s_I_DA72_DA73BBBBB01670.17 BB01
0733x1s_I_DA73_DT74BBBBB01740.19 BB01
0743x1s_I_DT74_DT75BBBBB00480.23 BB00
0753x1s_I_DT75_DC76BBBBB00920.19 BB00
0763x1s_I_DC76_DA77BB2BB07390.25 BB07
0773x1s_I_DA77_DG78BBBBB00640.28 BB00
0783x1s_I_DG78_DC79BB2BB07380.19 BB07
0793x1s_I_DC79_DT80B12BB04580.38 BB04
0803x1s_I_DT80_DG81B12BB04860.15 BB04
0813x1s_I_DG81_DA82BBBBB00790.22 BB00
0823x1s_I_DA82_DA83BBBBB00880.22 BB00
0833x1s_I_DA83_DC84BBBBB00820.18 BB00
0843x1s_I_DC84_DA85B12BB04700.24 BB04
0853x1s_I_DA85_DT86BBBBB00830.21 BB00
0863x1s_I_DT86_DG87BBBBB00770.21 BB00
0873x1s_I_DG87_DC88BB2BB07740.28 BB07
0883x1s_I_DC88_DC89BBBBB00610.28 BB00
0893x1s_I_DC89_DT90BB2BB07510.20 BB07
0903x1s_I_DT90_DT91B-ABA10700.40 BA10
0913x1s_I_DT91_DT92NANNANT00.52 AB04
0923x1s_I_DT92_DT93BBBBB01440.34 BB01
0933x1s_I_DT93_DG94NANNANT00.41 BA08
0943x1s_I_DG94_DA95AAAAA08900.24 AA08
0953x1s_I_DA95_DT96AAwAA06790.30 AA06
0963x1s_I_DT96_DG97A-BAB05630.22 AB05
0973x1s_I_DG97_DG98BBBBB00890.22 BB00
0983x1s_I_DG98_DA99BB2BB07730.24 BB07
0993x1s_I_DA99_DG100B12BB04230.66 BB04
1003x1s_I_DG100_DC101BB2BB08400.54 BB08
1013x1s_I_DC101_DA102BBBBB00230.68 BB00
1023x1s_I_DA102_DG103B12BB04810.29 BB04
1033x1s_I_DG103_DT104BBwBB02450.32 BB02
1043x1s_I_DT104_DT105NANNANT00.44 BB13
1053x1s_I_DT105_DT106NANNANT00.36 BB10
1063x1s_I_DT106_DC107BBwBB11430.34 BB11
1073x1s_I_DC107_DC108NANNANT00.50 BB00
1083x1s_I_DC108_DA109BB2BB07420.34 BB07
1093x1s_I_DA109_DA110BBBBB00930.10 BB00
1103x1s_I_DA110_DA111B-ABA08910.19 BA08
1113x1s_I_DA111_DT112A-BAB01190.27 AB01
1123x1s_I_DT112_DA113BBBBB00880.20 BB00
1133x1s_I_DA113_DC114miBBB13580.44 BB13
1143x1s_I_DC114_DA115BBBBB00560.43 BB00
1153x1s_I_DA115_DC116BBwBB11600.27 BB11
1163x1s_I_DC116_DT117BBwBB16190.63 BB16
1173x1s_I_DT117_DT118B-ABA05150.34 BA05
1183x1s_I_DT118_DT119BBBBB01200.25 BB01
1193x1s_I_DT119_DT120BBBBB00390.24 BB00
1203x1s_I_DT120_DG121NANNANT00.61 BA17
1213x1s_I_DG121_DG122A-BAB01440.38 AB01
1223x1s_I_DG122_DT123NANNANT00.41 BB11
1233x1s_I_DT123_DA124AAAAA0290.46 AA02
1243x1s_I_DA124_DG125NANNANT00.38 AA01
1253x1s_I_DG125_DA126NANNANT00.61 IC04
1263x1s_I_DA126_DA127BBwBB16360.59 BB16
1273x1s_I_DA127_DT128B-ABA09370.35 BA09
1283x1s_I_DT128_DC129A-BAB05330.41 AB05
1293x1s_I_DC129_DT130BB2BB07450.26 BB07
1303x1s_I_DT130_DG131NANNANT00.61 BB08
1313x1s_I_DG131_DC132NANNANT00.68 BB11
1323x1s_I_DC132_DA133NANNANT00.55 BB16
1333x1s_I_DA133_DG134NANNANT00.92 BB02
1343x1s_I_DG134_DG135NANNANT00.49 BB03
1353x1s_I_DG135_DT136NANNANT00.58 BA08
1363x1s_I_DT136_DG137NANNANT00.60 BB03
1373x1s_I_DG137_DG138BBBBB00870.16 BB00
1383x1s_I_DG138_DA139B12BB04720.20 BB04
1393x1s_I_DA139_DT140BBwBB02430.27 BB02
1403x1s_I_DT140_DA141BBBBB00620.33 BB00
1413x1s_I_DA141_DT142BBBBB00870.18 BB00
1423x1s_I_DT142_DT143BBBBB00710.24 BB00
1433x1s_I_DT143_DG144B-ABA08720.17 BA08
1443x1s_I_DG144_DA145A-BAB01280.40 AB01
1453x1s_I_DA145_DT146NANNANT01.11 IC04
1463x1s_J_DA147_DT148NANNANT00.80 BB03
1473x1s_J_DT148_DC149NANNANT01.03 BB10
1483x1s_J_DC149_DA150BBwBB03760.21 BB03
1493x1s_J_DA150_DA151BBBBB00450.44 BB00
1503x1s_J_DA151_DT152miBBB12670.46 BB12
1513x1s_J_DT152_DA153NANNANT00.78 BA10
1523x1s_J_DA153_DT154BBBBB00760.20 BB00
1533x1s_J_DT154_DC155B-ABA01110.45 BA01
1543x1s_J_DC155_DC156NANNANT00.33 BB01
1553x1s_J_DC156_DA157BBBBB00520.38 BB00
1563x1s_J_DA157_DC158B-ABA08920.15 BA08
1573x1s_J_DC158_DC159A-BAB01100.29 AB01
1583x1s_J_DC159_DT160BBBBB00380.40 BB00
1593x1s_J_DT160_DG161BBBBB00250.34 BB00
1603x1s_J_DG161_DC162NANNANT00.33 BB08
1613x1s_J_DC162_DA163NANNANT00.90 BB13
1623x1s_J_DA163_DG164NANNANT00.76 BB04
1633x1s_J_DG164_DA165NANNANT00.60 BB02
1643x1s_J_DA165_DT166BBwBB02640.24 BB02
1653x1s_J_DT166_DT167BBBBB00530.30 BB00
1663x1s_J_DT167_DC168BBBBB00860.16 BB00
1673x1s_J_DC168_DT169NANNANT00.56 BB02
1683x1s_J_DT169_DA170NANNANT00.55 BB11
1693x1s_J_DA170_DC171BBwBB03670.26 BB03
1703x1s_J_DC171_DC172BBwBB03210.51 BB03
1713x1s_J_DC172_DA173NANNANT00.55 BB04
1723x1s_J_DA173_DA174BBBBB00760.24 BB00
1733x1s_J_DA174_DA175NANNANT00.48 BB08
1743x1s_J_DA175_DA176BBBBB00570.44 BB00
1753x1s_J_DA176_DG177BBBBB00630.25 BB00
1763x1s_J_DG177_DT178BBBBB00640.27 BB00
1773x1s_J_DT178_DG179BBBBB00600.26 BB00
1783x1s_J_DG179_DT180BBBBB01440.25 BB01
1793x1s_J_DT180_DA181NANNANT00.35 BB03
1803x1s_J_DA181_DT182BBBBB00590.28 BB00
1813x1s_J_DT182_DT183BBwBB02160.34 BB02
1823x1s_J_DT183_DT184BBBBB00650.26 BB00
1833x1s_J_DT184_DG185BB2BB07680.24 BB07
1843x1s_J_DG185_DG186BBBBB00840.25 BB00
1853x1s_J_DG186_DA187BB2BB07890.27 BB07
1863x1s_J_DA187_DA188BBBBB00920.16 BB00
1873x1s_J_DA188_DA189BBBBB01860.12 BB01
1883x1s_J_DA189_DC190BBBBB01240.23 BB01
1893x1s_J_DC190_DT191BBBBB00110.21 BB00
1903x1s_J_DT191_DG192BB2BB07640.27 BB07
1913x1s_J_DG192_DC193BBBBB00920.16 BB00
1923x1s_J_DC193_DT194BBwBB11430.51 BB11
1933x1s_J_DT194_DC195BBBBB00230.62 BB00
1943x1s_J_DC195_DC196BB2BB07250.26 BB07
1953x1s_J_DC196_DA197BBBBB00530.21 BB00
1963x1s_J_DA197_DT198BBBBB01320.23 BB01
1973x1s_J_DT198_DC199A-BAB03280.33 AB03
1983x1s_J_DC199_DA200A-BAB03680.34 AB03
1993x1s_J_DA200_DA201BBBBB00660.30 BB00
2003x1s_J_DA201_DA202B12BB04500.22 BB04
2013x1s_J_DA202_DA203B12BB04210.31 BB04
2023x1s_J_DA203_DG204B12BB04380.35 BB04
2033x1s_J_DG204_DG205B12BB04750.31 BB04
2043x1s_J_DG205_DC206BBBBB00780.30 BB00
2053x1s_J_DC206_DA207BB2BB07640.23 BB07
2063x1s_J_DA207_DT208BBBBB00530.15 BB00
2073x1s_J_DT208_DG209B12BB04720.29 BB04
2083x1s_J_DG209_DT210BBBBB00510.31 BB00
2093x1s_J_DT210_DT211BBBBB00710.16 BB00
2103x1s_J_DT211_DC212BBBBB00880.27 BB00
2113x1s_J_DC212_DA213B12BB04660.27 BB04
2123x1s_J_DA213_DG214BB2BB07860.19 BB07
2133x1s_J_DG214_DC215BBBBB00680.30 BB00
2143x1s_J_DC215_DT216B-ABA17850.19 BA17
2153x1s_J_DT216_DG217NANNANT00.77 BB16
2163x1s_J_DG217_DA218BBBBB00600.39 BB00
2173x1s_J_DA218_DA219NANNANT00.30 BB00
2183x1s_J_DA219_DT220BBBBB01800.17 BB01
2193x1s_J_DT220_DT221BBBBB01650.22 BB01
2203x1s_J_DT221_DC222BBBBB00760.19 BB00
2213x1s_J_DC222_DA223B12BB04830.23 BB04
2223x1s_J_DA223_DG224B12BB04550.35 BB04
2233x1s_J_DG224_DC225B12BB04640.29 BB04
2243x1s_J_DC225_DT226BB2BB07580.23 BB07
2253x1s_J_DT226_DG227BBBBB00290.37 BB00
2263x1s_J_DG227_DA228B12BB04750.33 BB04
2273x1s_J_DA228_DA229BBBBB00590.20 BB00
2283x1s_J_DA229_DC230BBBBB00640.22 BB00
2293x1s_J_DC230_DA231B12BB04670.23 BB04
2303x1s_J_DA231_DT232BBBBB00820.19 BB00
2313x1s_J_DT232_DG233BBBBB00750.30 BB00
2323x1s_J_DG233_DC234BB2BB07180.40 BB07
2333x1s_J_DC234_DC235BBBBB00360.41 BB00
2343x1s_J_DC235_DT236BB2BB07710.18 BB07
2353x1s_J_DT236_DT237B-ABA08420.42 BA08
2363x1s_J_DT237_DT238A-BAB05260.23 AB05
2373x1s_J_DT238_DT239BBBBB00810.27 BB00
2383x1s_J_DT239_DG240NANNANT00.54 BB10
2393x1s_J_DG240_DA241NANNANT00.68 AA02
2403x1s_J_DA241_DT242NANNANT00.45 AA10
2413x1s_J_DT242_DG243A-BAB05560.32 AB05
2423x1s_J_DG243_DG244B12BB04330.29 BB04
2433x1s_J_DG244_DA245BBBBB00730.20 BB00
2443x1s_J_DA245_DG246miBBB10500.48 BB10
2453x1s_J_DG246_DC247NANNANT00.59 BA16
2463x1s_J_DC247_DA248A-BAB03490.39 AB03
2473x1s_J_DA248_DG249B12BB04710.29 BB04
2483x1s_J_DG249_DT250BBwBB0260.52 BB02
2493x1s_J_DT250_DT251NANNANT00.42 BA08
2503x1s_J_DT251_DT252NANNANT00.40 BB10
2513x1s_J_DT252_DC253BBwBB11780.30 BB11
2523x1s_J_DC253_DC254NANNANT00.49 BB17
2533x1s_J_DC254_DA255BB2BB07740.40 BB07
2543x1s_J_DA255_DA256BBBBB00800.16 BB00
2553x1s_J_DA256_DA257BBBBB00640.23 BB00
2563x1s_J_DA257_DT258BBBBB00610.26 BB00
2573x1s_J_DT258_DA259BBBBB00730.27 BB00
2583x1s_J_DA259_DC260BBBBB00800.16 BB00
2593x1s_J_DC260_DA261BBBBB00710.31 BB00
2603x1s_J_DA261_DC262BBBBB00150.29 BB00
2613x1s_J_DC262_DT263BBBBB00350.22 BB00
2623x1s_J_DT263_DT264BBBBB00480.25 BB00
2633x1s_J_DT264_DT265BBBBB01370.23 BB01
2643x1s_J_DT265_DT266BBBBB00420.23 BB00
2653x1s_J_DT266_DG267NANNANT00.59 BB07
2663x1s_J_DG267_DG268NANNANT00.45 BB00
2673x1s_J_DG268_DT269B-ABA08770.31 BA08
2683x1s_J_DT269_DA270AAAAA02250.36 AA02
2693x1s_J_DA270_DG271NANNANT00.72 AA05
2703x1s_J_DG271_DA272A-BAB05690.19 AB05
2713x1s_J_DA272_DA273BBBBB00650.24 BB00
2723x1s_J_DA273_DT274BBBBB01800.13 BB01
2733x1s_J_DT274_DC275BBBBB01290.23 BB01
2743x1s_J_DC275_DT276B12BB04810.24 BB04
2753x1s_J_DT276_DG277NANNANT00.53 BB08
2763x1s_J_DG277_DC278BBBBB00520.47 BB00
2773x1s_J_DC278_DA279BB2BB07810.25 BB07
2783x1s_J_DA279_DG280BBBBB00370.42 BB00
2793x1s_J_DG280_DG281NANNANT00.42 BA08
2803x1s_J_DG281_DT282AAAAA00420.28 AA00
2813x1s_J_DT282_DG283A-BAB01500.34 AB01
2823x1s_J_DG283_DG284BBBBB00730.29 BB00
2833x1s_J_DG284_DA285B12BB04820.21 BB04
2843x1s_J_DA285_DT286BBwBB02460.31 BB02
2853x1s_J_DT286_DA287miBBB15620.32 BB15
2863x1s_J_DA287_DT288BBBBB01820.22 BB01
2873x1s_J_DT288_DT289BBBBB00690.17 BB00
2883x1s_J_DT289_DG290B-ABA01520.28 BA01
2893x1s_J_DG290_DA291A-BAB01740.26 AB01
2903x1s_J_DA291_DT292BBBBB00860.23 BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

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