Conformers:
ABBIImiBZICOPNSYNN
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NMR Solution Structure of the Anthracycline Respinomycin D Intercalation Complex with a Double Stranded DNA Molecule (AGACGTCT)2
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 1n37_A_DA1_DG2 | NAN | NANT | 0 | 0.48 |
| 02 | 1n37_A_DG2_DA3 | B-A | BA05 | 21 | 0.30 |
| 03 | 1n37_A_DA3_DC4 | AAA | AA02 | 51 | 0.43 |
| 04 | 1n37_A_DC4_DG5 | A-B | AB03 | 12 | 0.65 |
| 05 | 1n37_A_DG5_DT6 | B-A | BA05 | 41 | 0.23 |
| 06 | 1n37_A_DT6_DC7 | A-B | AB01 | 67 | 0.40 |
| 07 | 1n37_A_DC7_DT8 | B-A | BA01 | 55 | 0.40 |
| 08 | 1n37_B_DA9_DG10 | BBB | BB00 | 31 | 0.53 |
| 09 | 1n37_B_DG10_DA11 | B-A | BA17 | 58 | 0.24 |
| 10 | 1n37_B_DA11_DC12 | AAA | AA02 | 45 | 0.49 |
| 11 | 1n37_B_DC12_DG13 | NAN | NANT | 0 | 0.76 |
| 12 | 1n37_B_DG13_DT14 | AAA | AA02 | 60 | 0.54 |
| 13 | 1n37_B_DT14_DC15 | B-A | BA05 | 34 | 0.35 |
| 14 | 1n37_B_DC15_DT16 | AAA | AA02 | 25 | 0.54 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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