Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
| step number | Step name | CANA | NtC | confal | rmsd | |
|---|---|---|---|---|---|---|
| 01 | 8ica_T_DC1_DA2 | NAN | NANT | 0 | 0.56 | BB00 |
| 02 | 8ica_T_DA2_DT3 | NAN | NANT | 0 | 0.23 | BA01 |
| 03 | 8ica_T_DT3_DT4 | A-B | AB03 | 30 | 0.44 | AB03 |
| 04 | 8ica_T_DT4_DA5 | BBB | BB00 | 11 | 0.38 | BB00 |
| 05 | 8ica_T_DA5_DG6 | NAN | NANT | 0 | 0.36 | BB00 |
| 06 | 8ica_T_DG6_DA7 | NAN | NANT | 0 | 0.48 | BA17 |
| 07 | 8ica_P_DT1_DC2 | NAN | NANT | 0 | 0.43 | AB05 |
| 08 | 8ica_P_DC2_DT3 | BBB | BB00 | 22 | 0.31 | BB00 |
| 09 | 8ica_P_DT3_DA4 | NAN | NANT | 0 | 0.50 | BA08 |
| 10 | 8ica_P_DA4_DA5 | AAA | AA02 | 23 | 0.50 | AA02 |
| 11 | 8ica_P_DA5_DT6 | NAN | NANT | 0 | 0.34 | BB02 |
| 12 | 8ica_P_DT6_DG7 | NAN | NANT | 0 | 0.64 | BB02 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Download
Results as csv or json file.Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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