Conformers:
ABBIImiBZICOPNSYNN
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Sarcin-ricin loop with modified residue.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 7jjf_A_U47_G48 | NAN | NANT | 0 | 1.31 |
| 02 | 7jjf_A_G48_C.A49 | AAA | AA08 | 86 | 0.20 |
| 03 | 7jjf_A_G48_C.B49 | NAN | NANT | 0 | 0.43 |
| 04 | 7jjf_A_C.A49_U.A50 | AAA | AA08 | 89 | 0.21 |
| 05 | 7jjf_A_C.B49_U.B50 | AAw | AA01 | 92 | 0.13 |
| 06 | 7jjf_A_U.A50_C51 | AAA | AA00 | 82 | 0.22 |
| 07 | 7jjf_A_U.B50_C51 | AAA | AA00 | 81 | 0.22 |
| 08 | 7jjf_A_C51_C52 | AAA | AA00 | 91 | 0.18 |
| 09 | 7jjf_A_C52_U53 | AAA | AA00 | 59 | 0.39 |
| 10 | 7jjf_A_U53_A54 | ZZZ | ZZ01 | 91 | 0.13 |
| 11 | 7jjf_A_A54_G55 | OPN | OP23 | 79 | 0.14 |
| 12 | 7jjf_A_G55_U56 | OPN | OP15 | 86 | 0.10 |
| 13 | 7jjf_A_U56_A57 | AAA | AA00 | 61 | 0.32 |
| 14 | 7jjf_A_A57_C58 | AAA | AA08 | 37 | 0.44 |
| 15 | 7jjf_A_C58_G59 | AAA | AA00 | 72 | 0.23 |
| 16 | 7jjf_A_G59_DA60 | OPN | OP03 | 74 | 0.19 |
| 17 | 7jjf_A_A75_G76 | AAw | AA05 | 90 | 0.18 |
| 18 | 7jjf_A_G76_G77 | AAA | AA08 | 46 | 0.45 |
| 19 | 7jjf_A_G77_A78 | OPN | OP08 | 83 | 0.08 |
| 20 | 7jjf_A_A78_C79 | AAA | AA00 | 61 | 0.24 |
| 21 | 7jjf_A_C79_C80 | AAA | AA08 | 75 | 0.31 |
| 22 | 7jjf_A_C80_G81 | AAA | AA00 | 16 | 0.48 |
| 23 | 7jjf_A_G81_G82 | AAA | AA00 | 70 | 0.25 |
| 24 | 7jjf_A_G82_A83 | AAA | AA08 | 84 | 0.17 |
| 25 | 7jjf_A_A83_G84 | AAA | AA00 | 57 | 0.21 |
| 26 | 7jjf_A_G84_U85 | AAA | AA00 | 75 | 0.24 |
| 27 | 7jjf_A_U85_G86 | AAA | AA00 | 80 | 0.17 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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