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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of human ALKBH5 in complex with N-oxalylglycine (NOG) and m6A-containing ssRNA

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017wl0_B_U1_G2NANNANT00.64OP22
027wl0_B_G2_G3NANNANT00.75OP20
037wl0_B_C5_U6NANNANT00.64OP18
047wl0_B_U6_G7NANNANT00.65OP21
057wl0_B_G7_C8NANNANT00.98OPS1
067wl0_D_U1_G2NANNANT01.23BB00
077wl0_D_G2_G3NANNANT00.76OP20
087wl0_F_U1_G2BB2BB07130.73BB07
097wl0_F_G2_G3NANNANT00.70OP20
107wl0_F_C5_U6NANNANT00.46OP18
117wl0_F_U6_G7NANNANT00.56OP21
127wl0_F_G7_C8NANNANT01.14OPS1
137wl0_H_G2_G3NANNANT00.81OP20
147wl0_J_G2_G3NANNANT00.66OP20

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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