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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Human DNA polymerase eta-DNA ternary mismatch complex:reaction with 10.0 mM Mn2+ for 90s

Results of the assignment of 42 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017u7f_T_DA2_DT3NANNANT00.81OP18
027u7f_T_DT3_DT.A4NANNANT00.81IC05
037u7f_T_DT3_DT.B4NANNANT00.75IC05
047u7f_T_DT.A4_DA.A5BBBBB00830.13BB00
057u7f_T_DT.A4_DA.C5BBBBB00750.20BB00
067u7f_T_DT.A4_DA.D5BBBBB00690.18BB00
077u7f_T_DT.B4_DA.B5BBBBB00870.20BB00
087u7f_T_DT.B4_DA.C5BBBBB00820.20BB00
097u7f_T_DT.B4_DA.D5BBBBB00760.20BB00
107u7f_T_DA.A5_DT.A6NANNANT00.45BA09
117u7f_T_DA.B5_DT.B6NANNANT00.42BA09
127u7f_T_DA.C5_DT.A6B-ABA09260.34BA09
137u7f_T_DA.C5_DT.B6NANNANT00.36BA09
147u7f_T_DA.D5_DT.A6B-ABA09220.37BA09
157u7f_T_DA.D5_DT.B6NANNANT00.41BA09
167u7f_T_DT.A6_DG.A7A-BAB03180.56AB03
177u7f_T_DT.B6_DG.B7BBwBB16290.48BB16
187u7f_T_DG.A7_DA8BBBBB00590.43BB00
197u7f_T_DG.B7_DA8BBBBB00430.41BB00
207u7f_T_DA8_DC9BBBBB01870.18BB01
217u7f_T_DC9_DG10BBBBB00530.38BB00
227u7f_T_DG10_DC11BBBBB00780.18BB00
237u7f_T_DC11_DT12BBBBB00840.23BB00
247u7f_P_DA.A1_DG.A2BBBBB00270.35BB00
257u7f_P_DA.B1_DG.B2BBBBB00290.36BB00
267u7f_P_DG.A2_DC3B-ABA05740.28BA05
277u7f_P_DG.B2_DC3B-ABA05730.29BA05
287u7f_P_DC3_DG4BBBBB01540.19BB01
297u7f_P_DG4_DT5BBBBB00830.20BB00
307u7f_P_DT5_DC.A6BBBBB01860.17BB01
317u7f_P_DT5_DC.C6BBBBB01290.26BB01
327u7f_P_DC.A6_DA.A7B-ABA05230.22BA05
337u7f_P_DC.C6_DA.C7B-ABA05300.26BA05
347u7f_P_DA.A7_DT.A8A-BAB01280.34AB01
357u7f_P_DA.A7_DT.B8AAAAA00160.53AA00
367u7f_P_DA.A7_DT.D8NANNANT00.58AA02
377u7f_P_DA.C7_DT.B8NANNANT00.49AA04
387u7f_P_DA.C7_DT.C8A-BAB01190.49AB01
397u7f_P_DA.C7_DT.D8NANNANT00.56AA04
407u7f_P_DT.B8_DG.B9AAuAA12210.48AA12
417u7f_P_DT.C8_DG.D9NANNANT00.65BA17
427u7f_P_DT.D8_DG.D9NANNANT00.61BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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