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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Thosea asigna virus RdRP domain in complex with RNA and nucleotide UMPNPP

Results of the assignment of 49 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017om7_E_A3_A4AAAAA04900.20AA04
027om7_E_A4_A5AAAAA03900.19AA03
037om7_E_A5_U6AAAAA00750.12AA00
047om7_E_U6_U7AAAAA00800.29AA00
057om7_E_U7_U8AAAAA00810.24AA00
067om7_F_C1_A2NANNANT01.03ZZS1
077om7_F_A2_A3AAAAA00740.22AA00
087om7_F_A3_A4AAwAA06340.48AA06
097om7_F_A4_A5AAAAA08640.33AA08
107om7_F_A5_U6AAAAA08830.15AA08
117om7_F_U6_U7NANNANT00.62AA11
127om7_F_U7_U8NANNANT00.67BB16
137om7_G_A3_A4AAAAA08630.24AA08
147om7_G_A4_A5AAAAA00640.26AA00
157om7_G_A5_U6AAAAA00870.11AA00
167om7_G_U6_U7AAAAA00860.25AA00
177om7_G_U7_U8AAAAA00370.36AA00
187om7_H_C1_A2NANNANT01.17OP26
197om7_H_A2_A3AAAAA00900.17AA00
207om7_H_A3_A4AAwAA01530.24AA01
217om7_H_A4_A5AAAAA08470.33AA08
227om7_H_A5_U6AAAAA08830.16AA08
237om7_H_U6_U7AAAAA00780.23AA00
247om7_H_U7_U8AAAAA00780.22AA00
257om7_I_C1_A2NANNANT01.19OP26
267om7_I_A2_A3AAAAA00940.14AA00
277om7_I_A3_A4AAwAA06250.50AA06
287om7_I_A4_A5AAAAA08650.30AA08
297om7_I_A5_U6AAAAA00820.12AA00
307om7_I_U6_U7AAAAA00730.24AA00
317om7_I_U7_U8AAAAA08810.20AA08
327om7_J_A2_A3AAwAA01280.34AA01
337om7_J_A3_A4AAAAA00670.20AA00
347om7_J_A4_A5AAAAA00700.25AA00
357om7_J_A5_U6AAAAA00690.16AA00
367om7_J_U6_U7AAAAA08860.20AA08
377om7_J_U7_U8A-BAB05750.19AB05
387om7_K_C1_A2NANNANT00.99ZZS1
397om7_K_A2_A3AAAAA00870.16AA00
407om7_K_A3_A4AAwAA10220.39AA10
417om7_K_A4_A5AAAAA08450.36AA08
427om7_K_A5_U6AAAAA08850.15AA08
437om7_K_U6_U7AAAAA00790.22AA00
447om7_K_U7_U8A-BAB05470.33AB05
457om7_L_A3_A4AAAAA08700.21AA08
467om7_L_A4_A5AAAAA00630.23AA00
477om7_L_A5_U6AAAAA08940.16AA08
487om7_L_U6_U7AAAAA00770.20AA00
497om7_L_U7_U8A-BAB04530.33AB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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