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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of human DNA polymerase beta complexed with 3-deaza-3-methyladenine (3dMeA) in the template base paired with incoming dTTP

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017mz4_T_DC1_DC2BBBBB00920.21BB00
027mz4_T_DC2_DG3B12BB04750.23BB04
037mz4_T_DG3_DA4BBBBB00860.22BB00
047mz4_T_DZM6_DT7BBBBB00640.20BB00
057mz4_T_DT7_DC8BBBBB00540.30BB00
067mz4_T_DC8_DG9B12BB04760.31BB04
077mz4_T_DG9_DC10BBBBB00770.16BB00
087mz4_T_DC10_DA11BBBBB00790.26BB00
097mz4_T_DA11_DT12BBBBB01710.21BB01
107mz4_T_DT12_DC13BBBBB00480.32BB00
117mz4_T_DC13_DA14BBBBB00780.26BB00
127mz4_T_DA14_DG15BBBBB00920.18BB00
137mz4_T_DG15_DC16B12BB04800.18BB04
147mz4_P_DG1_DC2AAAAA00750.32AA00
157mz4_P_DC2_DT3A-BAB05790.24AB05
167mz4_P_DT3_DG4BBBBB00590.20BB00
177mz4_P_DG4_DA5BBBBB00720.26BB00
187mz4_P_DA5_DT6BBBBB01780.19BB01
197mz4_P_DT6_DG7BBBBB00720.21BB00
207mz4_P_DG7_DC8B-ABA05770.10BA05
217mz4_P_DC8_DG9A-BAB01470.21AB01
227mz4_P_DG9_DA10BBBBB00950.12BB00
237mz4_D_DG1_DT2BBBBB01820.18BB01
247mz4_D_DT2_DC3BBBBB01840.17BB01
257mz4_D_DC3_DG4BBBBB00660.24BB00
267mz4_D_DG4_DG5BB2BB07720.23BB07

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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