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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of human DNA polymerase beta complexed with dzA at N-1 of the template base paired with incoming dTTP

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017mz2_T_DC1_DC2BBBBB00430.52BB00
027mz2_T_DC2_DG3BB2BB07750.13BB07
037mz2_T_DG3_DA4BBBBB00780.16BB00
047mz2_T_DA4_DC5BBBBB00750.19BB00
057mz2_T_DC5_DG6NANNANT01.26OP21
067mz2_T_DC8_DG9B12BB04340.38BB04
077mz2_T_DG9_DC10BBBBB00860.17BB00
087mz2_T_DC10_DA11BBBBB00900.21BB00
097mz2_T_DA11_DT12BBBBB01870.19BB01
107mz2_T_DT12_DC13BBBBB00480.23BB00
117mz2_T_DC13_DA14BBBBB00360.33BB00
127mz2_T_DA14_DG15BBBBB00720.19BB00
137mz2_T_DG15_DC16BBBBB00780.19BB00
147mz2_P_DG1_DC2A-BAB03730.32AB03
157mz2_P_DC2_DT3BBBBB00610.20BB00
167mz2_P_DT3_DG4BBBBB00760.19BB00
177mz2_P_DG4_DA5BBBBB00830.29BB00
187mz2_P_DA5_DT6BBBBB00940.13BB00
197mz2_P_DT6_DG7BBBBB00800.19BB00
207mz2_P_DG7_DC8BBBBB01650.20BB01
217mz2_P_DC8_DG9B-ABA05570.33BA05
227mz2_P_DG9_DT10AAAAA02190.49AA02
237mz2_D_DG1_DT2BBBBB01840.21BB01
247mz2_D_DT2_DC3BBBBB00720.16BB00
257mz2_D_DC3_DG4BBBBB00600.42BB00
267mz2_D_DG4_DG5BBBBB00810.18BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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