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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the DRM2-CCG DNA complex

Results of the assignment of 32 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017l4k_B_DT1_DA2BB2BB07690.28BB07
027l4k_B_DA2_DA3BBBBB01770.19BB01
037l4k_B_DA3_DA4BBBBB01690.17BB01
047l4k_B_DA4_DT5BBBBB01630.18BB01
057l4k_B_DT5_DT6B-ABA05590.23BA05
067l4k_B_DT6_DC7A-BAB03600.16AB03
077l4k_B_DC7_DG8B-ABA01210.28BA01
087l4k_B_DG8_DG9NANNANT00.60IC04
097l4k_B_DG9_DA10BBBBB00760.20BB00
107l4k_B_DA10_DT11BBBBB00800.14BB00
117l4k_B_DT11_DT12B-ABA10940.26BA10
127l4k_B_DT12_DA13A-BAB03240.37AB03
137l4k_B_DA13_DG14A-BAB03910.16AB03
147l4k_B_DG14_DG15BBBBB00670.30BB00
157l4k_B_DG15_DA16BBBBB00390.32BB00
167l4k_B_DA16_DA17B-ABA17530.23BA17
177l4k_B_DA17_DT18NANNANT00.42BB13
187l4k_C_DA1_DT2BBwBB03250.31BB03
197l4k_C_DT2_DT3BBwBB16500.58BB16
207l4k_C_DT3_DC4BBBBB00590.22BB00
217l4k_C_DC4_DC5NANNANT00.70BB12
227l4k_C_DC5_DT6A-BAB05890.20AB05
237l4k_C_DT6_DA7B-ABA05630.21BA05
247l4k_C_DA7_DA8A-BAB03820.34AB03
257l4k_C_DA8_DT9BBBBB00900.24BB00
267l4k_C_DC11_DG12BBBBB0070.49BB00
277l4k_C_DG12_DA13BBBBB00800.22BB00
287l4k_C_DA13_DA14B12BB04350.18BB04
297l4k_C_DA14_DT15BBBBB01210.22BB01
307l4k_C_DT15_DT16BBBBB01210.30BB01
317l4k_C_DT16_DT17BBwBB02690.23BB02
327l4k_C_DT17_DA18BBBBB00270.47BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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