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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA Polymerase Mu, 8-oxodGTP:Ct Product State Ternary Complex, 10 mM Mg2+ (2160min)

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017kth_T_DC1_DG2A-BAB01560.24AB01
027kth_T_DG2_DG3B-ABA05780.19BA05
037kth_T_DG3_DC4BBBBB01650.27BB01
047kth_T_DC4_DC5NANNANT01.13OP21
057kth_T_DC5_DT6BBBBB00600.28BB00
067kth_T_DT6_DA7B-ABA10590.45BA10
077kth_T_DA7_DC8A-BAB05920.17AB05
087kth_T_DC8_DG9BBBBB00290.42BB00
097kth_P_DC1_DG2AAAAA00890.19AA00
107kth_P_DG2_DT3AAAAA00870.18AA00
117kth_P_DT3_DA4AAAAA00740.20AA00
127kth_P_DA4_8OG5AAAAA09830.18AA09
137kth_D_DG1_DC2B-ABA05120.37BA05
147kth_D_DC2_DC.A3AAAAA02110.51AA02
157kth_D_DC2_DC.B3A-BAB01120.33AB01
167kth_D_DC.A3_DG.A4A-BAB02750.36AB02
177kth_D_DC.B3_DG.B4BBBBB00800.20BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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