Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structures of artificially designed homomeric RNA nanoarchitectures

Results of the assignment of 50 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017jrr_A_GTP1_G2NANNANT00.49AA04
027jrr_A_G2_A3AAAAA00860.14AA00
037jrr_A_A3_C4AAAAA00580.16AA00
047jrr_A_C4_G5AAwAA01850.12AA01
057jrr_A_G5_G6AAAAA00190.50AA00
067jrr_A_G6_G7A-BAB05790.20AB05
077jrr_A_G7_A8NANNANT00.80BB07
087jrr_A_A8_G9OPNOP24920.13OP24
097jrr_A_G9_C10AAAAA00810.19AA00
107jrr_A_C10_U11AAAAA00670.15AA00
117jrr_A_U11_G12AAAAA00700.14AA00
127jrr_A_G12_A13OPNOP05590.47OP05
137jrr_A_A13_A14AAAAA00190.36AA00
147jrr_A_A14_C15AAAAA00350.21AA00
157jrr_A_C15_C16AAAAA00410.33AA00
167jrr_A_C16_A17AAAAA00760.29AA00
177jrr_A_A17_U18AAAAA00810.22AA00
187jrr_A_U18_C19AAwAA10680.26AA10
197jrr_A_C19_C20AAAAA00740.26AA00
207jrr_A_C20_A21AAAAA00860.13AA00
217jrr_A_A21_G22AAAAA00830.13AA00
227jrr_A_G22_C23AAAAA00790.23AA00
237jrr_A_C23_G24AAAAA00770.22AA00
247jrr_A_G24_A25NANNANT01.18BB2S
257jrr_A_A25_A26NANNANT00.41OP21
267jrr_A_A26_G27NANNANT00.53OP20
277jrr_A_G27_A28OPNOP10700.24OP10
287jrr_A_A28_A29AAwAA01900.16AA01
297jrr_A_A29_C30AAAAA08410.57AA08
307jrr_A_C30_G31AAAAA00830.15AA00
317jrr_A_G31_U32AAAAA00860.12AA00
327jrr_A_U32_C33AAAAA00940.14AA00
337jrr_A_C33_C34AAAAA00860.16AA00
347jrr_A_C34_C35AAAAA00540.29AA00
357jrr_A_C35_G36AAAAA00710.16AA00
367jrr_A_G36_A37AAAAA00920.10AA00
377jrr_A_A37_C38AAAAA00950.14AA00
387jrr_A_C38_G39AAAAA00380.23AA00
397jrr_A_G39_G40NANNANT01.52OP06
407jrr_A_G40_A41AAAAA00230.35AA00
417jrr_A_A41_U42AAAAA00620.24AA00
427jrr_A_U42_G43AAAAA00530.18AA00
437jrr_A_G43_G44AAAAA00640.21AA00
447jrr_A_G44_U45AAAAA08810.34AA08
457jrr_A_U45_U46AAAAA00790.25AA00
467jrr_A_U46_C47AAAAA00860.21AA00
477jrr_A_C47_G48AAAAA00880.11AA00
487jrr_A_G48_U49AAAAA00810.12AA00
497jrr_A_U49_C50AAAAA08850.19AA08
507jrr_A_C50_G51AAAAA00460.28AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N