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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Sarcin-ricin loop with modified residue.

Results of the assignment of 27 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017jjf_A_U47_G48NANNANT01.31OP16
027jjf_A_G48_C.A49AAAAA08860.20AA08
037jjf_A_G48_C.B49NANNANT00.43AA04
047jjf_A_C.A49_U.A50AAAAA08890.21AA08
057jjf_A_C.B49_U.B50AAwAA01920.13AA01
067jjf_A_U.A50_C51AAAAA00820.22AA00
077jjf_A_U.B50_C51AAAAA00810.22AA00
087jjf_A_C51_C52AAAAA00910.18AA00
097jjf_A_C52_U53AAAAA00590.39AA00
107jjf_A_U53_A54ZZZZZ01910.13ZZ01
117jjf_A_A54_G55OPNOP23790.14OP23
127jjf_A_G55_U56OPNOP15860.10OP15
137jjf_A_U56_A57AAAAA00610.32AA00
147jjf_A_A57_C58AAAAA08370.44AA08
157jjf_A_C58_G59AAAAA00720.23AA00
167jjf_A_G59_DA60OPNOP03740.19OP03
177jjf_A_A75_G76AAwAA05900.18AA05
187jjf_A_G76_G77AAAAA08460.45AA08
197jjf_A_G77_A78OPNOP08830.08OP08
207jjf_A_A78_C79AAAAA00610.24AA00
217jjf_A_C79_C80AAAAA08750.31AA08
227jjf_A_C80_G81AAAAA00160.48AA00
237jjf_A_G81_G82AAAAA00700.25AA00
247jjf_A_G82_A83AAAAA08840.17AA08
257jjf_A_A83_G84AAAAA00570.21AA00
267jjf_A_G84_U85AAAAA00750.24AA00
277jjf_A_U85_G86AAAAA00800.17AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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