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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Sarcin-ricin loop with guanosine monothiophosphate residue.

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017jjd_A_U2647_G.A2648NANNANT01.41OP16
027jjd_A_U2647_G.B2648NANNANT01.29OP16
037jjd_A_G.A2648_C.A2649AAAAA00780.22AA00
047jjd_A_G.B2648_C.B2649AAAAA00480.38AA00
057jjd_A_C.A2649_U.A2650AAAAA00810.11AA00
067jjd_A_C.B2649_U.B2650AAwAA01840.19AA01
077jjd_A_U.A2650_C2651AAAAA00780.19AA00
087jjd_A_U.B2650_C2651AAAAA00810.22AA00
097jjd_A_C2651_C2652AAAAA00760.20AA00
107jjd_A_C2652_U2653AAAAA00550.37AA00
117jjd_A_U2653_A2654ZZZZZ01920.11ZZ01
127jjd_A_A2654_G2655OPNOP23790.17OP23
137jjd_A_G2655_U2656OPNOP15900.11OP15
147jjd_A_U2656_A2657AAAAA00610.35AA00
157jjd_A_A2657_C2658AAAAA00120.49AA00
167jjd_A_C2658_G2659AAAAA00790.24AA00
177jjd_A_G2659_A2660OPNOP03840.17OP03
187jjd_A_A2662_G2663AAwAA05740.21AA05
197jjd_A_G2663_G2664AAAAA00430.46AA00
207jjd_A_G2664_A2665OPNOP08630.12OP08
217jjd_A_A2665_C2666AAAAA00630.28AA00
227jjd_A_C2666_C2667AAAAA00340.43AA00
237jjd_A_C2667_G2668AAAAA00210.47AA00
247jjd_A_G2668_G2669AAAAA00610.23AA00
257jjd_A_G2669_A2670AAAAA00780.15AA00
267jjd_A_A2670_G2671AAwAA01780.27AA01
277jjd_A_G2671_U2672AAAAA00490.39AA00
287jjd_A_U2672_G2673AAAAA00670.21AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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