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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Thermus thermophilus transcription initiation complex containing a template-strand purine at position TSS-2, GpG RNA primer, and CMPcPP

Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017eh1_G_DT1_DA2NANNANT01.04ZZS1
027eh1_G_DA2_DT3NANNANT01.10OP14
037eh1_G_DT3_DA4BBwBB16540.33BB16
047eh1_G_DA4_DA5BBBBB00510.31BB00
057eh1_G_DA5_DT6NANNANT00.62OP20
067eh1_G_DT6_DG7NANNANT02.21OP19
077eh1_G_DG7_DG8NANNANT01.01IC05
087eh1_G_DG8_DG9NANNANT00.47BB02
097eh1_G_DG9_DA10BBBBB00140.47BB00
107eh1_G_DA10_DG11miBBB13760.27BB13
117eh1_G_DG11_DC12NANNANT01.55BB03
127eh1_G_DC12_DT13NANNANT01.43BB10
137eh1_G_DT13_DG14NANNANT01.06OP30
147eh1_G_DG14_DT15NANNANT01.17OP29
157eh1_G_DT15_DC16NANNANT00.40BB10
167eh1_G_DC16_DA17NANNANT00.43BB10
177eh1_G_DA17_DC18miBBB15520.40BB15
187eh1_G_DC18_DG19BBBBB00730.19BB00
197eh1_G_DG19_DG20B12BB04320.46BB04
207eh1_G_DG20_DA21B12BB04830.22BB04
217eh1_G_DA21_DT22NANNANT00.56BA08
227eh1_G_DT22_DG23NANNANT00.35BB02
237eh1_G_DG23_DC24NANNANT00.46BB05
247eh1_G_DC24_DA25NANNANT00.65BB03
257eh1_H_DT3_DG4AAAAA00650.26AA00
267eh1_H_DG4_DC5AAwAA01240.41AA01
277eh1_H_DC5_DA6NANNANT00.55AA04
287eh1_H_DA6_DT7NANNANT00.30BB15
297eh1_H_DT7_DC8BBBBB00620.14BB00
307eh1_H_DC8_DC9BBBBB00560.23BB00
317eh1_H_DC9_DG10BBBBB00510.14BB00
327eh1_H_DG10_DT11miBBB10150.33BB10
337eh1_H_DT11_DG12B-ABA01630.22BA01
347eh1_H_DG12_DA13AAAAA00320.32AA00
357eh1_H_DA13_DG14NANNANT00.89OP06
367eh1_H_DG14_DC15AAAAA00620.33AA00
377eh1_H_DC15_DC16AAAAA08710.24AA08
387eh1_H_DC16_DA17AAAAA04690.29AA04
397eh1_H_DA17_DA18A-BAB05270.34AB05
407eh1_H_DA18_DG19NANNANT00.44BB00
417eh1_I_G1_G2AAAAA04760.29AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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