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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

RNA duplex containing CC mispairs

Results of the assignment of 22 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017edt_A_G1_G2AAAAA00430.28AA00
027edt_A_G2_A3AAwAA01960.12AA01
037edt_A_A3_C4AAAAA00840.18AA00
047edt_A_C4_U5AAAAA00900.23AA00
057edt_A_U5_C6NANNANT00.56AB04
067edt_A_C6_C7NANNANT00.67OP15
077edt_A_C7_G8NANNANT00.73AA08
087edt_A_G8_G9AAAAA00820.22AA00
097edt_A_G9_5BU10AAAAA00880.13AA00
107edt_A_5BU10_C11AAAAA00910.10AA00
117edt_A_C11_C12AAAAA00900.20AA00
127edt_B_G13_G14AAAAA00600.23AA00
137edt_B_G14_A15AAAAA00980.05AA00
147edt_B_A15_C16AAAAA00790.14AA00
157edt_B_C16_U17AAAAA00890.19AA00
167edt_B_U17_C18AAAAA00910.11AA00
177edt_B_C18_C19OPNOP07440.40OP07
187edt_B_C19_G20NANNANT00.81AA08
197edt_B_G20_G21AAAAA00730.25AA00
207edt_B_G21_5BU22AAAAA00760.19AA00
217edt_B_5BU22_C23AAAAA00920.12AA00
227edt_B_C23_C24AAAAA00960.12AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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