DNATCO v4.1: results

Cryo-EM structure of the full-length Bacillus subtilis glyQS T-box riboswitch in complex with tRNA-Gly

Results of the assignment of 224 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	6pom_A_G13_U14	AAu	AA12	51	0.36	AA12
002	6pom_A_U14_U15	NAN	NANT	0	0.60	AA04
003	6pom_A_U15_G16	AAA	AA04	86	0.26	AA04
004	6pom_A_G16_C17	AAA	AA00	65	0.22	AA00
005	6pom_A_C17_A18	AAA	AA08	58	0.40	AA08
006	6pom_A_A18_G19	NAN	NANT	0	1.14	IC01
007	6pom_A_G19_U20	NAN	NANT	0	1.62	ZZS2
008	6pom_A_U20_G21	NAN	NANT	0	1.54	IC04
009	6pom_A_G21_A22	NAN	NANT	0	0.83	OP26
010	6pom_A_A22_G23	AAA	AA00	8	0.49	AA00
011	6pom_A_G23_A24	AAA	AA00	85	0.14	AA00
012	6pom_A_A24_G25	AAA	AA00	75	0.20	AA00
013	6pom_A_G25_A26	AAA	AA00	98	0.11	AA00
014	6pom_A_A26_A27	AAA	AA00	36	0.29	AA00
015	6pom_A_A27_A28	NAN	NANT	0	0.69	AA11
016	6pom_A_A28_G29	NAN	NANT	0	0.86	AB2S
017	6pom_A_G29_A30	NAN	NANT	0	1.00	IC03
018	6pom_A_A30_A31	NAN	NANT	0	0.87	AA13
019	6pom_A_A31_G32	NAN	NANT	0	1.23	IC03
020	6pom_A_G32_U33	NAN	NANT	0	0.61	OP26
021	6pom_A_U33_A34	AAA	AA04	72	0.32	AA04
022	6pom_A_A34_C35	AAA	AA04	53	0.47	AA04
023	6pom_A_C35_U36	AAA	AA00	74	0.28	AA00
024	6pom_A_U36_U37	AAA	AA00	87	0.16	AA00
025	6pom_A_U37_G38	AAA	AA00	76	0.16	AA00
026	6pom_A_G38_C39	AAA	AA00	86	0.17	AA00
027	6pom_A_C39_G40	AAA	AA00	82	0.17	AA00
028	6pom_A_G40_U41	AAA	AA08	65	0.33	AA08
029	6pom_A_U41_U42	A-B	AB05	43	0.43	AB05
030	6pom_A_U42_A44	NAN	NANT	0	0.93	OP1S
031	6pom_A_A44_C45	NAN	NANT	0	0.93	IC03
032	6pom_A_C45_C46	AAA	AA00	43	0.42	AA00
033	6pom_A_C46_U47	AAA	AA00	26	0.35	AA00
034	6pom_A_U47_C48	NAN	NANT	0	0.38	AA10
035	6pom_A_C48_A49	AAA	AA00	67	0.20	AA00
036	6pom_A_A49_U50	NAN	NANT	0	0.51	AA01
037	6pom_A_U50_G51	NAN	NANT	0	1.79	BB1S
038	6pom_A_G51_A52	NAN	NANT	0	0.90	AA12
039	6pom_A_A52_A53	AAw	AA01	62	0.25	AA01
040	6pom_A_A53_A54	AAA	AA08	80	0.33	AA08
041	6pom_A_A54_G55	AAA	AA08	57	0.43	AA08
042	6pom_A_G55_C56	OPN	OP03	36	0.32	OP03
043	6pom_A_C56_G57	AAA	AA00	53	0.27	AA00
044	6pom_A_G57_A58	ICL	IC01	75	0.29	IC01
045	6pom_A_A58_C59	NAN	NANT	0	0.49	OP14
046	6pom_A_C59_C60	AAA	AA00	76	0.22	AA00
047	6pom_A_C60_U61	AAA	AA00	85	0.20	AA00
048	6pom_A_U61_U62	AAA	AA00	76	0.22	AA00
049	6pom_A_U62_A63	AAA	AA00	89	0.11	AA00
050	6pom_A_A63_G64	AAw	AA10	79	0.19	AA10
051	6pom_A_G64_G65	AAA	AA08	71	0.32	AA08
052	6pom_A_G65_G66	AAA	AA00	92	0.16	AA00
053	6pom_A_G66_C67	AAA	AA00	95	0.15	AA00
054	6pom_A_C67_G68	NAN	NANT	0	1.88	OP29
055	6pom_A_G68_G69	NAN	NANT	0	0.32	AA06
056	6pom_A_G69_U70	AAA	AA00	27	0.40	AA00
057	6pom_A_U70_G71	NAN	NANT	0	0.91	AA10
058	6pom_A_G71_U72	NAN	NANT	0	0.87	OP03
059	6pom_A_U72_A73	AAw	AA05	42	0.35	AA05
060	6pom_A_A73_A74	NAN	NANT	0	0.68	IC04
061	6pom_A_A74_G75	NAN	NANT	0	0.49	IC06
062	6pom_A_G75_C76	NAN	NANT	0	0.36	OP12
063	6pom_A_C76_U77	AAu	AA12	50	0.40	AA12
064	6pom_A_U77_A78	AAA	AA00	78	0.10	AA00
065	6pom_A_A78_A79	AAA	AA00	76	0.17	AA00
066	6pom_A_A79_G80	AAA	AA00	86	0.12	AA00
067	6pom_A_G80_G81	AAA	AA00	89	0.12	AA00
068	6pom_A_G81_A82	AAA	AA00	41	0.36	AA00
069	6pom_A_A82_U83	AAA	AA00	89	0.19	AA00
070	6pom_A_U83_G84	AAA	AA08	19	0.34	AA08
071	6pom_A_G84_A85	AAA	AA08	96	0.12	AA08
072	6pom_A_A85_G86	NAN	NANT	0	0.98	AA11
073	6pom_A_A88_C89	AAA	AA00	41	0.28	AA00
074	6pom_A_C89_G90	AAA	AA00	54	0.22	AA00
075	6pom_A_G90_C91	AAA	AA00	62	0.20	AA00
076	6pom_A_C91_A92	AAA	AA00	56	0.22	AA00
077	6pom_A_A92_A93	AAA	AA00	69	0.17	AA00
078	6pom_A_A93_C94	AAA	AA00	69	0.21	AA00
079	6pom_A_C94_G95	AAA	AA00	16	0.47	AA00
080	6pom_A_G95_A96	NAN	NANT	0	0.66	IC07
081	6pom_A_A96_A97	AAA	AA02	60	0.21	AA02
082	6pom_A_A97_A98	AAA	AA02	66	0.31	AA02
083	6pom_A_A98_G99	NAN	NANT	0	0.42	AA07
084	6pom_A_G99_G100	AAA	AA08	90	0.10	AA08
085	6pom_A_G100_C101	AAA	AA00	77	0.20	AA00
086	6pom_A_C101_A102	AAA	AA00	61	0.26	AA00
087	6pom_A_A102_U103	AAA	AA00	28	0.38	AA00
088	6pom_A_U103_U104	AAA	AA00	59	0.28	AA00
089	6pom_A_U104_C105	AAA	AA00	98	0.12	AA00
090	6pom_A_C105_U106	AAu	AA12	61	0.46	AA12
091	6pom_A_U106_U107	AAA	AA00	89	0.22	AA00
092	6pom_A_U107_G108	A-B	AB05	31	0.57	AB05
093	6pom_A_G108_A109	NAN	NANT	0	1.09	BB08
094	6pom_A_A109_G110	OPN	OP24	72	0.35	OP24
095	6pom_A_G110_C111	NAN	NANT	0	0.52	AA01
096	6pom_A_C111_A112	AAA	AA08	62	0.30	AA08
097	6pom_A_A112_A113	AAw	AA01	39	0.29	AA01
098	6pom_A_A113_U114	NAN	NANT	0	0.71	AA04
099	6pom_A_A118_A119	NAN	NANT	0	1.33	AA04
100	6pom_A_A119_A120	NAN	NANT	0	0.58	AA13
101	6pom_A_A120_A121	NAN	NANT	0	1.28	OP19
102	6pom_A_A121_A122	NAN	NANT	0	0.64	BB2S
103	6pom_A_A122_A123	NAN	NANT	0	0.89	BA17
104	6pom_A_A123_G124	NAN	NANT	0	1.78	OP21
105	6pom_A_G124_A125	NAN	NANT	0	0.47	ZZ02
106	6pom_A_A125_G126	NAN	NANT	0	1.11	IC03
107	6pom_A_G126_G127	NAN	NANT	0	1.87	OP31
108	6pom_A_G127_C128	AAA	AA04	63	0.34	AA04
109	6pom_A_C128_U129	AAA	AA00	21	0.34	AA00
110	6pom_A_U129_G130	AAw	AA10	13	0.48	AA10
111	6pom_A_G130_G131	AAA	AA00	20	0.35	AA00
112	6pom_A_G131_G132	NAN	NANT	0	0.46	AA10
113	6pom_A_G132_A133	NAN	NANT	0	0.66	AA01
114	6pom_A_U140_C141	AAA	AA00	28	0.38	AA00
115	6pom_A_C141_U142	NAN	NANT	0	0.56	AA10
116	6pom_A_U142_C143	NAN	NANT	0	0.45	AA01
117	6pom_A_C143_A144	NAN	NANT	0	0.54	AA01
118	6pom_A_A144_G145	AAw	AA01	89	0.18	AA01
119	6pom_A_G145_C146	NAN	NANT	0	0.97	AB02
120	6pom_A_C146_A147	NAN	NANT	0	1.22	OP17
121	6pom_A_A147_A148	NAN	NANT	0	1.73	OP24
122	6pom_A_A148_C149	NAN	NANT	0	2.18	OP29
123	6pom_A_C149_U150	NAN	NANT	0	0.95	AA12
124	6pom_A_U150_A151	NAN	NANT	0	0.58	AA01
125	6pom_A_A151_G152	NAN	NANT	0	0.55	AA01
126	6pom_A_G152_G153	AAA	AA00	72	0.21	AA00
127	6pom_A_G153_G154	AAA	AA00	89	0.18	AA00
128	6pom_A_G154_U155	AAA	AA08	84	0.19	AA08
129	6pom_A_U155_G156	AAA	AA00	90	0.15	AA00
130	6pom_A_G156_G157	AAA	AA00	92	0.12	AA00
131	6pom_A_G157_A158	A-B	AB05	88	0.17	AB05
132	6pom_A_A158_A159	NAN	NANT	0	0.51	ZZ1S
133	6pom_A_A159_C160	NAN	NANT	0	0.85	OPS1
134	6pom_A_C160_C161	NAN	NANT	0	1.74	OP16
135	6pom_A_C161_G162	AAA	AA00	83	0.24	AA00
136	6pom_A_G162_C163	AAA	AA00	78	0.17	AA00
137	6pom_A_C163_G164	AAA	AA00	87	0.16	AA00
138	6pom_A_G164_G165	AAA	AA00	93	0.13	AA00
139	6pom_A_G165_G166	AAA	AA00	87	0.18	AA00
140	6pom_A_G166_A167	NAN	NANT	0	0.61	AA12
141	6pom_A_U172_C173	AAA	AA08	10	0.55	AA08
142	6pom_A_C173_U174	AAA	AA00	90	0.19	AA00
143	6pom_A_U174_C175	AAA	AA00	91	0.14	AA00
144	6pom_A_C175_G176	AAA	AA00	75	0.22	AA00
145	6pom_A_G176_U177	AAA	AA00	80	0.19	AA00
146	6pom_A_U177_C178	NAN	NANT	0	0.57	OP31
147	6pom_A_C178_C179	AAu	AA12	63	0.39	AA12
148	6pom_A_C179_C180	AAA	AA04	52	0.32	AA04
149	6pom_A_C180_U181	NAN	NANT	0	0.74	AA07
150	6pom_A_U181_A182	NAN	NANT	0	0.45	AA06
151	6pom_B_G1_C2	NAN	NANT	0	0.53	AA03
152	6pom_B_C2_G3	AAw	AA01	17	0.33	AA01
153	6pom_B_G3_G4	AAA	AA00	64	0.22	AA00
154	6pom_B_G4_A5	AAA	AA00	90	0.13	AA00
155	6pom_B_A5_A6	AAA	AA00	74	0.14	AA00
156	6pom_B_A6_G7	A-B	AB05	28	0.38	AB05
157	6pom_B_G7_U8	OPN	OP11	75	0.26	OP11
158	6pom_B_U8_A9	NAN	NANT	0	0.96	IC02
159	6pom_B_A9_G10	NAN	NANT	0	1.37	OP26
160	6pom_B_G10_U11	AAA	AA08	17	0.33	AA08
161	6pom_B_U11_U12	AAA	AA00	96	0.18	AA00
162	6pom_B_U12_C13	AAw	AA01	50	0.27	AA01
163	6pom_B_C13_A14	AAA	AA00	11	0.30	AA00
164	6pom_B_A14_G15	AAA	AA08	73	0.38	AA08
165	6pom_B_G15_U16	NAN	NANT	0	1.95	OP26
166	6pom_B_U16_G17	NAN	NANT	0	2.18	OPS1
167	6pom_B_G17_G18	NAN	NANT	0	0.86	IC04
168	6pom_B_G18_U19	NAN	NANT	0	1.89	OP20
169	6pom_B_U19_A20	NAN	NANT	0	1.40	OP16
170	6pom_B_A20_G21	NAN	NANT	0	0.70	BA16
171	6pom_B_G21_A22	AAu	AA12	71	0.25	AA12
172	6pom_B_A22_A23	AAA	AA00	80	0.15	AA00
173	6pom_B_A23_C24	AAA	AA00	83	0.16	AA00
174	6pom_B_C24_A25	AAA	AA00	37	0.34	AA00
175	6pom_B_A25_C26	AAA	AA00	48	0.28	AA00
176	6pom_B_C26_C27	AAA	AA00	84	0.18	AA00
177	6pom_B_C27_A28	AAA	AA00	84	0.17	AA00
178	6pom_B_A28_C29	AAA	AA00	78	0.20	AA00
179	6pom_B_C29_C30	AAA	AA00	83	0.17	AA00
180	6pom_B_C30_U31	NAN	NANT	0	0.94	AB02
181	6pom_B_U31_U32	NAN	NANT	0	0.40	AA10
182	6pom_B_U32_G33	NAN	NANT	0	0.88	OP03
183	6pom_B_G33_C34	AAA	AA08	43	0.24	AA08
184	6pom_B_C34_C35	AAA	AA00	85	0.16	AA00
185	6pom_B_C35_A36	AAA	AA00	28	0.44	AA00
186	6pom_B_A36_A37	AAA	AA00	76	0.22	AA00
187	6pom_B_A37_G38	AAA	AA00	49	0.41	AA00
188	6pom_B_G38_G39	AAw	AA01	11	0.36	AA01
189	6pom_B_G39_U40	AAA	AA08	65	0.26	AA08
190	6pom_B_U40_G41	AAw	AA11	93	0.22	AA11
191	6pom_B_G41_G42	AAA	AA08	21	0.33	AA08
192	6pom_B_G42_G43	AAA	AA00	36	0.22	AA00
193	6pom_B_G43_G44	AAA	AA09	61	0.33	AA09
194	6pom_B_G44_G45	NAN	NANT	0	0.45	IC03
195	6pom_B_G45_U46	NAN	NANT	0	0.98	BB13
196	6pom_B_U46_C47	NAN	NANT	0	0.61	OP22
197	6pom_B_C47_G48	NAN	NANT	0	1.38	OP05
198	6pom_B_G48_C49	AAA	AA00	25	0.36	AA00
199	6pom_B_C49_G50	AAA	AA00	91	0.11	AA00
200	6pom_B_G50_G51	AAA	AA00	87	0.14	AA00
201	6pom_B_G51_G52	AAA	AA00	83	0.13	AA00
202	6pom_B_G52_U53	AAA	AA00	90	0.17	AA00
203	6pom_B_U53_U54	AAA	AA08	70	0.37	AA08
204	6pom_B_U54_C55	OPN	OP03	79	0.43	OP03
205	6pom_B_C55_G56	AAA	AA00	51	0.38	AA00
206	6pom_B_G56_A57	ICL	IC01	23	0.53	IC01
207	6pom_B_A57_A58	OPN	OP25	52	0.54	OP25
208	6pom_B_A58_U59	NAN	NANT	0	0.57	AA01
209	6pom_B_U59_C60	NAN	NANT	0	0.34	OP12
210	6pom_B_C60_C61	AAA	AA00	19	0.38	AA00
211	6pom_B_C61_C62	AAA	AA00	76	0.17	AA00
212	6pom_B_C62_G63	AAA	AA00	78	0.15	AA00
213	6pom_B_G63_U64	AAA	AA00	85	0.21	AA00
214	6pom_B_U64_C65	AAA	AA00	79	0.21	AA00
215	6pom_B_C65_U66	AAA	AA00	89	0.18	AA00
216	6pom_B_U66_U67	AAA	AA00	75	0.22	AA00
217	6pom_B_U67_C68	AAA	AA00	69	0.20	AA00
218	6pom_B_C68_C69	AAA	AA00	33	0.32	AA00
219	6pom_B_C69_G70	AAA	AA04	71	0.19	AA04
220	6pom_B_G70_C71	NAN	NANT	0	0.39	AA03
221	6pom_B_C71_U72	AAA	AA00	51	0.31	AA00
222	6pom_B_U72_C73	AAw	AA11	44	0.39	AA11
223	6pom_B_C73_C74	AAA	AA08	84	0.14	AA08
224	6pom_B_C74_A75	AAA	AA00	90	0.19	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 224 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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