DNATCO v4.1: results

Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA

Results of the assignment of 134 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.

Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.

step number	Step name	CANA	NtC	confal	rmsd	NtCs
001	6lvr_D_G1_C2	AAA	AA00	53	0.26	AA00
002	6lvr_D_C2_G3	AAA	AA00	90	0.12	AA00
003	6lvr_D_G3_G4	AAA	AA00	69	0.19	AA00
004	6lvr_D_G4_A5	AAA	AA00	85	0.13	AA00
005	6lvr_D_A5_U6	AAA	AA08	94	0.15	AA08
006	6lvr_D_U6_U7	A-B	AB05	91	0.20	AB05
007	6lvr_D_U7_U8	OPN	OP11	74	0.39	OP11
008	6lvr_D_U8_A9	NAN	NANT	0	0.98	IC02
009	6lvr_D_A9_2MG10	NAN	NANT	0	1.15	OP26
010	6lvr_D_2MG10_C11	AAA	AA08	15	0.40	AA08
011	6lvr_D_C11_U12	AAA	AA00	86	0.19	AA00
012	6lvr_D_U12_C13	AAw	AA01	57	0.26	AA01
013	6lvr_D_C13_A14	NAN	NANT	0	0.76	AA11
014	6lvr_D_A14_G15	NAN	NANT	0	0.81	AA00
015	6lvr_D_G15_H2U16	NAN	NANT	0	1.27	OP08
016	6lvr_D_H2U16_H2U17	NAN	NANT	0	1.03	OP29
017	6lvr_D_H2U17_G18	NAN	NANT	0	1.51	OP21
018	6lvr_D_G18_G19	NAN	NANT	0	0.97	BB10
019	6lvr_D_G19_G20	NAN	NANT	0	2.07	IC04
020	6lvr_D_G20_A21	NAN	NANT	0	1.77	OP25
021	6lvr_D_A21_G22	NAN	NANT	0	0.70	AA11
022	6lvr_D_G22_A23	AAA	AA00	60	0.19	AA00
023	6lvr_D_A23_G24	AAA	AA08	86	0.13	AA08
024	6lvr_D_G24_C25	AAA	AA00	74	0.20	AA00
025	6lvr_D_C25_M2G26	AAA	AA00	57	0.31	AA00
026	6lvr_D_M2G26_C27	AAA	AA00	62	0.31	AA00
027	6lvr_D_C27_C28	AAA	AA00	83	0.18	AA00
028	6lvr_D_C28_A29	AAA	AA00	82	0.12	AA00
029	6lvr_D_A29_G30	AAA	AA00	82	0.17	AA00
030	6lvr_D_G30_A31	AAA	AA00	57	0.33	AA00
031	6lvr_D_A31_OMC32	AAA	AA08	91	0.18	AA08
032	6lvr_D_OMC32_U33	AAA	AA08	93	0.13	AA08
033	6lvr_D_U33_OMG34	OPN	OP03	80	0.30	OP03
034	6lvr_D_OMG34_A35	AAA	AA00	29	0.39	AA00
035	6lvr_D_A35_A36	AAA	AA00	88	0.22	AA00
036	6lvr_D_A36_YYG37	AAA	AA00	68	0.19	AA00
037	6lvr_D_YYG37_A38	AAA	AA08	37	0.41	AA08
038	6lvr_D_5MC40_U41	AAA	AA00	71	0.25	AA00
039	6lvr_D_U41_G42	AAA	AA00	85	0.13	AA00
040	6lvr_D_G42_G43	AAA	AA00	91	0.12	AA00
041	6lvr_D_G43_A44	AAA	AA00	68	0.20	AA00
042	6lvr_D_A44_G45	AAA	AA00	54	0.41	AA00
043	6lvr_D_G45_7MG46	ICL	IC01	42	0.44	IC01
044	6lvr_D_7MG46_U47	NAN	NANT	0	0.78	OP13
045	6lvr_D_U47_C48	NAN	NANT	0	0.81	OP17
046	6lvr_D_C48_5MC49	NAN	NANT	0	1.52	OP05
047	6lvr_D_5MC49_U50	AAA	AA00	79	0.22	AA00
048	6lvr_D_U50_G51	AAA	AA00	93	0.08	AA00
049	6lvr_D_G51_U52	AAA	AA00	92	0.15	AA00
050	6lvr_D_U52_G53	AAw	AA10	92	0.18	AA10
051	6lvr_D_G53_5MU54	AAA	AA08	58	0.24	AA08
052	6lvr_D_C56_G57	AAA	AA08	74	0.21	AA08
053	6lvr_D_G57_1MA58	ICL	IC01	84	0.31	IC01
054	6lvr_D_1MA58_U59	OPN	OP25	50	0.42	OP25
055	6lvr_D_U59_C60	A-B	AB05	89	0.30	AB05
056	6lvr_D_C60_C61	OPN	OP12	82	0.13	OP12
057	6lvr_D_C61_A62	AAA	AA00	38	0.32	AA00
058	6lvr_D_A62_C63	AAA	AA00	95	0.10	AA00
059	6lvr_D_C63_A64	AAA	AA00	90	0.11	AA00
060	6lvr_D_A64_G65	AAA	AA00	88	0.12	AA00
061	6lvr_D_G65_A66	AAA	AA00	94	0.07	AA00
062	6lvr_D_A66_A67	AAA	AA08	92	0.15	AA08
063	6lvr_D_A67_U68	AAA	AA00	96	0.11	AA00
064	6lvr_D_U68_U69	AAA	AA00	87	0.19	AA00
065	6lvr_D_U69_C70	AAA	AA08	70	0.37	AA08
066	6lvr_D_C70_G71	AAA	AA00	64	0.22	AA00
067	6lvr_D_G71_C72	AAA	AA00	93	0.15	AA00
068	6lvr_B_G1_C2	AAA	AA00	57	0.26	AA00
069	6lvr_B_C2_G3	AAA	AA00	91	0.11	AA00
070	6lvr_B_G3_G4	AAA	AA00	84	0.15	AA00
071	6lvr_B_G4_A5	AAA	AA00	87	0.14	AA00
072	6lvr_B_A5_U6	AAA	AA08	95	0.16	AA08
073	6lvr_B_U6_U7	A-B	AB05	86	0.22	AB05
074	6lvr_B_U7_U8	OPN	OP11	71	0.29	OP11
075	6lvr_B_U8_A9	NAN	NANT	0	0.89	IC02
076	6lvr_B_A9_2MG10	NAN	NANT	0	1.17	OP26
077	6lvr_B_2MG10_C11	AAA	AA08	13	0.39	AA08
078	6lvr_B_C11_U12	AAA	AA00	96	0.10	AA00
079	6lvr_B_U12_C13	AAw	AA01	73	0.22	AA01
080	6lvr_B_C13_A14	NAN	NANT	0	0.63	AA06
081	6lvr_B_A14_G15	AAA	AA08	60	0.55	AA08
082	6lvr_B_G15_H2U16	NAN	NANT	0	1.09	OP31
083	6lvr_B_H2U16_H2U17	NAN	NANT	0	1.98	OP09
084	6lvr_B_H2U17_G18	NAN	NANT	0	1.47	OP18
085	6lvr_B_G18_G19	NAN	NANT	0	0.76	IC06
086	6lvr_B_G19_G20	NAN	NANT	0	2.04	OP19
087	6lvr_B_G20_A21	NAN	NANT	0	1.14	OP06
088	6lvr_B_A21_G22	NAN	NANT	0	0.74	AA06
089	6lvr_B_G22_A23	AAA	AA08	74	0.26	AA08
090	6lvr_B_A23_G24	AAA	AA00	92	0.10	AA00
091	6lvr_B_G24_C25	AAA	AA00	73	0.23	AA00
092	6lvr_B_C25_M2G26	AAA	AA00	70	0.20	AA00
093	6lvr_B_M2G26_C27	AAA	AA08	77	0.20	AA08
094	6lvr_B_C27_C28	AAA	AA08	51	0.34	AA08
095	6lvr_B_C28_A29	AAA	AA00	69	0.17	AA00
096	6lvr_B_A29_G30	AAA	AA00	80	0.19	AA00
097	6lvr_B_G30_A31	AAA	AA00	56	0.34	AA00
098	6lvr_B_A31_OMC32	AAA	AA08	87	0.16	AA08
099	6lvr_B_OMC32_U33	AAA	AA08	70	0.17	AA08
100	6lvr_B_U33_OMG34	OPN	OP03	65	0.36	OP03
101	6lvr_B_OMG34_A35	AAA	AA00	27	0.40	AA00
102	6lvr_B_A35_A36	AAA	AA00	87	0.21	AA00
103	6lvr_B_A36_YYG37	AAA	AA00	60	0.22	AA00
104	6lvr_B_YYG37_A38	AAA	AA08	36	0.41	AA08
105	6lvr_B_5MC40_U41	AAA	AA00	67	0.26	AA00
106	6lvr_B_U41_G42	AAA	AA00	88	0.13	AA00
107	6lvr_B_G42_G43	AAA	AA00	87	0.14	AA00
108	6lvr_B_G43_A44	AAA	AA00	84	0.15	AA00
109	6lvr_B_A44_G45	AAA	AA00	45	0.43	AA00
110	6lvr_B_G45_7MG46	ICL	IC01	67	0.40	IC01
111	6lvr_B_7MG46_U47	NAN	NANT	0	0.75	OP14
112	6lvr_B_U47_C48	NAN	NANT	0	0.77	OP17
113	6lvr_B_C48_5MC49	NAN	NANT	0	1.49	OP05
114	6lvr_B_5MC49_U50	AAA	AA00	74	0.19	AA00
115	6lvr_B_U50_G51	AAA	AA00	92	0.12	AA00
116	6lvr_B_G51_U52	AAA	AA00	83	0.18	AA00
117	6lvr_B_U52_G53	AAw	AA10	88	0.16	AA10
118	6lvr_B_G53_5MU54	AAA	AA08	24	0.27	AA08
119	6lvr_B_C56_G57	AAA	AA08	95	0.25	AA08
120	6lvr_B_G57_1MA58	ICL	IC01	79	0.32	IC01
121	6lvr_B_1MA58_U59	OPN	OP25	45	0.42	OP25
122	6lvr_B_U59_C60	A-B	AB05	78	0.42	AB05
123	6lvr_B_C60_C61	OPN	OP12	86	0.14	OP12
124	6lvr_B_C61_A62	AAu	AA12	67	0.36	AA12
125	6lvr_B_A62_C63	AAA	AA00	87	0.11	AA00
126	6lvr_B_C63_A64	AAA	AA00	87	0.13	AA00
127	6lvr_B_A64_G65	AAA	AA08	70	0.21	AA08
128	6lvr_B_G65_A66	AAA	AA00	84	0.15	AA00
129	6lvr_B_A66_A67	AAA	AA00	84	0.17	AA00
130	6lvr_B_A67_U68	AAA	AA00	90	0.10	AA00
131	6lvr_B_U68_U69	AAA	AA00	79	0.22	AA00
132	6lvr_B_U69_C70	AAA	AA08	67	0.45	AA08
133	6lvr_B_C70_G71	AAA	AA08	79	0.19	AA08
134	6lvr_B_G71_C72	AAA	AA00	72	0.26	AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

	δ1	ε1	ζ1	α2	β2	γ2	δ2	χ1	χ2	μ	NN	CC
step_torsions
ntC_average
Δ torsions
torsion scores

comments	step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA

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Results of the assignment of 134 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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