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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of DNMT3A (R882H) in complex with CGT DNA

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016w8d_E_DG422_DC423NANNANT00.76AB02
026w8d_E_DC423_DA424NANNANT00.53AB03
036w8d_E_DA424_DT425NANNANT00.43BB07
046w8d_E_DT425_DG426BBBBB00180.41BB00
056w8d_E_DG426_PYO427NANNANT01.08OP17
066w8d_E_PYO427_DG428NANNANT01.90OP21
076w8d_E_DG428_DT429BBBBB00440.32BB00
086w8d_E_DT429_DT430BBBBB00940.12BB00
096w8d_E_DT430_DC431BBBBB00800.20BB00
106w8d_E_DC431_DT432NANNANT00.43BB10
116w8d_E_DT432_DA433B12BB04600.32BB04
126w8d_E_DA433_DA434B-ABA08270.37BA08
136w8d_E_DA434_DT435NANNANT00.62AB02
146w8d_E_DT435_DT436BBBBB00490.24BB00
156w8d_E_DT436_DA437BBBBB00480.26BB00
166w8d_E_DA437_DG438NANNANT00.61BA09
176w8d_E_DG438_DA439A-BAB04360.43AB04
186w8d_E_DA439_DA440NANNANT00.43BB03
196w8d_E_DA440_DC441A-BAB02400.47AB02
206w8d_E_DC441_DG442NANNANT00.34BB01
216w8d_E_DG442_DC443NANNANT00.46AB01
226w8d_E_DC443_DA444NANNANT00.57BB08
236w8d_E_DA444_DT445BBBBB00130.50BB00
246w8d_E_DT445_DG446NANNANT00.42BB04
256w8d_F_DG422_DC423BBBBB00140.50BB00
266w8d_F_DC423_DA424BB2BB07800.23BB07
276w8d_F_DA424_DT425BB2BB07140.48BB07
286w8d_F_DT425_DG426BBBBB00250.41BB00
296w8d_F_DG426_PYO427NANNANT01.13OP17
306w8d_F_PYO427_DG428NANNANT01.88OP21
316w8d_F_DG428_DT429NANNANT00.49BB13
326w8d_F_DT429_DT430NANNANT00.48BB16
336w8d_F_DT430_DC431B-ABA10710.31BA10
346w8d_F_DC431_DT432AAwAA01260.44AA01
356w8d_F_DT432_DA433NANNANT00.48AB05
366w8d_F_DA433_DA434NANNANT00.74BB03
376w8d_F_DA434_DT435NANNANT00.57AB02
386w8d_F_DT435_DT436A-BAB02520.48AB02
396w8d_F_DT436_DA437NANNANT00.41BB10
406w8d_F_DA437_DG438NANNANT00.58BA17
416w8d_F_DG438_DA439NANNANT00.46AB02
426w8d_F_DA439_DA440NANNANT00.53AB02
436w8d_F_DA440_DC441NANNANT00.77AB02
446w8d_F_DC441_DG442NANNANT00.70AA09
456w8d_F_DG442_DC443NANNANT00.61AB04
466w8d_F_DC443_DA444NANNANT00.87OP24
476w8d_F_DA444_DT445miBBB15510.34BB15
486w8d_F_DT445_DG446miBBB10380.40BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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