Conformers:
ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
Structure of DNMT3A (R882H) in complex with CGT DNA
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 6w8d_E_DG422_DC423 | NAN | NANT | 0 | 0.76 |
| 02 | 6w8d_E_DC423_DA424 | NAN | NANT | 0 | 0.53 |
| 03 | 6w8d_E_DA424_DT425 | NAN | NANT | 0 | 0.43 |
| 04 | 6w8d_E_DT425_DG426 | BBB | BB00 | 18 | 0.41 |
| 05 | 6w8d_E_DG426_PYO427 | NAN | NANT | 0 | 1.08 |
| 06 | 6w8d_E_PYO427_DG428 | NAN | NANT | 0 | 1.90 |
| 07 | 6w8d_E_DG428_DT429 | BBB | BB00 | 44 | 0.32 |
| 08 | 6w8d_E_DT429_DT430 | BBB | BB00 | 94 | 0.12 |
| 09 | 6w8d_E_DT430_DC431 | BBB | BB00 | 80 | 0.20 |
| 10 | 6w8d_E_DC431_DT432 | NAN | NANT | 0 | 0.43 |
| 11 | 6w8d_E_DT432_DA433 | B12 | BB04 | 60 | 0.32 |
| 12 | 6w8d_E_DA433_DA434 | B-A | BA08 | 27 | 0.37 |
| 13 | 6w8d_E_DA434_DT435 | NAN | NANT | 0 | 0.62 |
| 14 | 6w8d_E_DT435_DT436 | BBB | BB00 | 49 | 0.24 |
| 15 | 6w8d_E_DT436_DA437 | BBB | BB00 | 48 | 0.26 |
| 16 | 6w8d_E_DA437_DG438 | NAN | NANT | 0 | 0.61 |
| 17 | 6w8d_E_DG438_DA439 | A-B | AB04 | 36 | 0.43 |
| 18 | 6w8d_E_DA439_DA440 | NAN | NANT | 0 | 0.43 |
| 19 | 6w8d_E_DA440_DC441 | A-B | AB02 | 40 | 0.47 |
| 20 | 6w8d_E_DC441_DG442 | NAN | NANT | 0 | 0.34 |
| 21 | 6w8d_E_DG442_DC443 | NAN | NANT | 0 | 0.46 |
| 22 | 6w8d_E_DC443_DA444 | NAN | NANT | 0 | 0.57 |
| 23 | 6w8d_E_DA444_DT445 | BBB | BB00 | 13 | 0.50 |
| 24 | 6w8d_E_DT445_DG446 | NAN | NANT | 0 | 0.42 |
| 25 | 6w8d_F_DG422_DC423 | BBB | BB00 | 14 | 0.50 |
| 26 | 6w8d_F_DC423_DA424 | BB2 | BB07 | 80 | 0.23 |
| 27 | 6w8d_F_DA424_DT425 | BB2 | BB07 | 14 | 0.48 |
| 28 | 6w8d_F_DT425_DG426 | BBB | BB00 | 25 | 0.41 |
| 29 | 6w8d_F_DG426_PYO427 | NAN | NANT | 0 | 1.13 |
| 30 | 6w8d_F_PYO427_DG428 | NAN | NANT | 0 | 1.88 |
| 31 | 6w8d_F_DG428_DT429 | NAN | NANT | 0 | 0.49 |
| 32 | 6w8d_F_DT429_DT430 | NAN | NANT | 0 | 0.48 |
| 33 | 6w8d_F_DT430_DC431 | B-A | BA10 | 71 | 0.31 |
| 34 | 6w8d_F_DC431_DT432 | AAw | AA01 | 26 | 0.44 |
| 35 | 6w8d_F_DT432_DA433 | NAN | NANT | 0 | 0.48 |
| 36 | 6w8d_F_DA433_DA434 | NAN | NANT | 0 | 0.74 |
| 37 | 6w8d_F_DA434_DT435 | NAN | NANT | 0 | 0.57 |
| 38 | 6w8d_F_DT435_DT436 | A-B | AB02 | 52 | 0.48 |
| 39 | 6w8d_F_DT436_DA437 | NAN | NANT | 0 | 0.41 |
| 40 | 6w8d_F_DA437_DG438 | NAN | NANT | 0 | 0.58 |
| 41 | 6w8d_F_DG438_DA439 | NAN | NANT | 0 | 0.46 |
| 42 | 6w8d_F_DA439_DA440 | NAN | NANT | 0 | 0.53 |
| 43 | 6w8d_F_DA440_DC441 | NAN | NANT | 0 | 0.77 |
| 44 | 6w8d_F_DC441_DG442 | NAN | NANT | 0 | 0.70 |
| 45 | 6w8d_F_DG442_DC443 | NAN | NANT | 0 | 0.61 |
| 46 | 6w8d_F_DC443_DA444 | NAN | NANT | 0 | 0.87 |
| 47 | 6w8d_F_DA444_DT445 | miB | BB15 | 51 | 0.34 |
| 48 | 6w8d_F_DT445_DG446 | miB | BB10 | 38 | 0.40 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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