Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the DNA binding domain (DBD) of human FLI1 and the complex of the DBD of human Runx2 with core binding factor beta (Cbfb), in complex with 16mer DNA CAGAGGATGTGGCTTC

Results of the assignment of 30 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016vgd_B_DC1_DA2NANNANT00.52BA08
026vgd_B_DA2_DG3A-BAB03720.35AB03
036vgd_B_DG3_DA4B12BB04110.33BB04
046vgd_B_DA4_DG5BBBBB00390.38BB00
056vgd_B_DG5_DG6B12BB04100.38BB04
066vgd_B_DG6_DA7BBBBB00900.23BB00
076vgd_B_DA7_DT8miBBB10560.23BB10
086vgd_B_DT8_DG9B12BB04340.30BB04
096vgd_B_DG9_DT10BBBBB0090.49BB00
106vgd_B_DT10_DG11B12BB04180.31BB04
116vgd_B_DG11_DG12B12BB04700.19BB04
126vgd_B_DG12_DC13NANNANT00.44BA08
136vgd_B_DC13_DT14NANNANT00.68BB00
146vgd_B_DT14_DT15BBwBB02330.38BB02
156vgd_B_DT15_DC16B12BB05130.55BB05
166vgd_C_DG2_DA3NANNANT00.36BB07
176vgd_C_DA3_DA4NANNANT00.45AB02
186vgd_C_DA4_DG5BBwBB02360.36BB02
196vgd_C_DG5_DC6B-ABA10380.35BA10
206vgd_C_DC6_DC7AAAAA00200.59AA00
216vgd_C_DC7_DA8NANNANT00.37AB03
226vgd_C_DA8_DC9miBBB13730.30BB13
236vgd_C_DC9_DA10BBwBB17150.43BB17
246vgd_C_DA10_DT11miBBB15210.41BB15
256vgd_C_DT11_DC12B-ABA0550.39BA05
266vgd_C_DC12_DC13miBBB10380.32BB10
276vgd_C_DC13_DT14NANNANT00.68BB10
286vgd_C_DT14_DC15NANNANT00.64AB02
296vgd_C_DC15_DT16NANNANT00.39BB10
306vgd_C_DT16_DG17B12BB04180.37BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N