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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA Polymerase Mu, 8-oxorGTP:Ct Reaction State Ternary Complex, 50 mM Mn2+ (960 min)

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016vfb_T_DC.A1_DG.A2A-BAB05630.27AB05
026vfb_T_DC.B1_DG.B2BBwBB02130.44BB02
036vfb_T_DG.A2_DG3BBBBB00710.28BB00
046vfb_T_DG.B2_DG3BBBBB00210.31BB00
056vfb_T_DG3_DC4BBBBB00640.26BB00
066vfb_T_DC4_DC5NANNANT01.17OP21
076vfb_T_DC5_DT6B-ABA05850.17BA05
086vfb_T_DT6_DA7B-ABA10490.53BA10
096vfb_T_DA7_DC8NANNANT00.57BB16
106vfb_T_DC8_DG9BBBBB00290.42BB00
116vfb_P_DC1_DG2AAAAA00840.22AA00
126vfb_P_DG2_DT3AAAAA00940.16AA00
136vfb_P_DT3_DA.A4NANNANT00.30ZZ01
146vfb_P_DT3_DA.B4AAAAA00610.25AA00
156vfb_D_DG1_DC2B-ABA01140.27BA01
166vfb_D_DC2_DC3A-BAB01440.40AB01
176vfb_D_DC3_DG4B12BB04830.17BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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