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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

SRA domain of UHRF1 in complex with DNA

Results of the assignment of 21 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016vcs_C_DG1_DC2NANNANT01.30OP17
026vcs_C_DC2_DC3AAAAA08700.28AA08
036vcs_C_DC3_DT4A-BAB01500.22AB01
046vcs_C_DT4_DG5B-ABA10820.25BA10
056vcs_C_DG5_DT6NANNANT00.46AB04
066vcs_C_DT6_DA7NANNANT00.46AA02
076vcs_C_DA7_DC8BBBBB01110.30BB01
086vcs_C_DC8_DA9BBBBB00660.35BB00
096vcs_C_DA9_DG10BBBBB00760.27BB00
106vcs_C_DG10_DG11B12BB04850.23BB04
116vcs_C_DG11_DC12NANNANT00.56ZZ01
126vcs_D_DC2_DC3AAAAA08220.27AA08
136vcs_D_DC3_DT4A-BAB01690.24AB01
146vcs_D_DT4_DG5B-ABA10750.29BA10
156vcs_D_DG5_DT6AAAAA00200.38AA00
166vcs_D_DT6_DA7AAAAA02330.47AA02
176vcs_D_DA7_DC8BBBBB01370.28BB01
186vcs_D_DC8_DA9BBBBB00730.30BB00
196vcs_D_DA9_DG10BBBBB00780.29BB00
206vcs_D_DG10_DG11BBBBB00610.38BB00
216vcs_D_DG11_DC12NANNANT00.53ZZ01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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