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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of ternary DNA complex " FX(1-2)-2Xis" containing E. coli Fis and phage lambda Xis

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016p0u_C_DA1_DA2B12BB04800.18BB04
026p0u_C_DA2_DT3B-ABA05460.22BA05
036p0u_C_DT3_DG4BBBBB01230.28BB01
046p0u_C_DG4_DT5B-ABA05150.24BA05
056p0u_C_DT5_DT6A-BAB01300.32AB01
066p0u_C_DT6_DG7BBBBB00740.24BB00
076p0u_C_DG7_DT8B-ABA05680.24BA05
086p0u_C_DT8_DG9NANNANT00.42BA10
096p0u_C_DG9_DT10AAwAA01240.39AA01
106p0u_C_DT10_DT11A-BAB0190.41AB01
116p0u_C_DT11_DT12BBBBB00640.23BB00
126p0u_C_DT12_DT13BBBBB00710.22BB00
136p0u_C_DT13_DT14BBBBB00830.24BB00
146p0u_C_DT14_DA15BBBBB00660.22BB00
156p0u_C_DA15_DA16B12BB04620.18BB04
166p0u_C_DA16_DC17B-ABA01590.22BA01
176p0u_C_DC17_DA18A-BAB01290.20AB01
186p0u_C_DA18_DG19B-ABA05400.33BA05
196p0u_C_DG19_DA20BBBBB00100.41BB00
206p0u_C_DA20_DC21B-ABA05580.21BA05
216p0u_C_DC21_DT22NANNANT00.46BA08
226p0u_C_DT22_DA23BBBBB00730.29BB00
236p0u_C_DA23_DC24BBBBB01730.22BB01
246p0u_C_DC24_DA25BBBBB00390.27BB00
256p0u_C_DA25_DT26BBBBB01800.17BB01
266p0u_C_DT26_DT27B-ABA01470.27BA01
276p0u_D_DA1_DA2BBBBB00730.25BB00
286p0u_D_DA2_DT3BBBBB01520.28BB01
296p0u_D_DT3_DG4BBBBB00720.30BB00
306p0u_D_DG4_DT5BBBBB00820.23BB00
316p0u_D_DT5_DA6B12BB04690.25BB04
326p0u_D_DA6_DG7BBBBB00820.23BB00
336p0u_D_DG7_DT8B12BB04580.35BB04
346p0u_D_DT8_DC9B-ABA10790.23BA10
356p0u_D_DC9_DT10AAAAA00480.26AA00
366p0u_D_DT10_DG11A-BAB01120.38AB01
376p0u_D_DG11_DT12BBBBB00350.34BB00
386p0u_D_DT12_DT13BBBBB00910.15BB00
396p0u_D_DT13_DA14B12BB04400.29BB04
406p0u_D_DA14_DA15BBBBB00600.19BB00
416p0u_D_DA15_DA16BBBBB01480.27BB01
426p0u_D_DA16_DA17BBBBB01850.22BB01
436p0u_D_DA17_DA18BBBBB01800.22BB01
446p0u_D_DA18_DC19B-ABA05360.33BA05
456p0u_D_DC19_DA20NANNANT00.34AA01
466p0u_D_DA20_DC21NANNANT00.48AB04
476p0u_D_DC21_DA22B12BB04190.25BB04
486p0u_D_DA22_DA23B-ABA09200.47BA09
496p0u_D_DA23_DC24NANNANT00.57AA02
506p0u_D_DC24_DA25BBBBB00310.36BB00
516p0u_D_DA25_DT26BBBBB01830.15BB01
526p0u_D_DT26_DT27B-ABA01400.24BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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