DNATCO v3.2: results

Crystal structure of ternary DNA complex " FX(1-2)-2Xis" containing E. coli Fis and phage lambda Xis

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	6p0u_C_DA1_DA2	B12	BB04	80	0.18	BB04
02	6p0u_C_DA2_DT3	B-A	BA05	46	0.22	BA05
03	6p0u_C_DT3_DG4	BBB	BB01	23	0.28	BB01
04	6p0u_C_DG4_DT5	B-A	BA05	15	0.24	BA05
05	6p0u_C_DT5_DT6	A-B	AB01	30	0.32	AB01
06	6p0u_C_DT6_DG7	BBB	BB00	74	0.24	BB00
07	6p0u_C_DG7_DT8	B-A	BA05	68	0.24	BA05
08	6p0u_C_DT8_DG9	NAN	NANT	0	0.42	BA10
09	6p0u_C_DG9_DT10	AAw	AA01	24	0.39	AA01
10	6p0u_C_DT10_DT11	A-B	AB01	9	0.41	AB01
11	6p0u_C_DT11_DT12	BBB	BB00	64	0.23	BB00
12	6p0u_C_DT12_DT13	BBB	BB00	71	0.22	BB00
13	6p0u_C_DT13_DT14	BBB	BB00	83	0.24	BB00
14	6p0u_C_DT14_DA15	BBB	BB00	66	0.22	BB00
15	6p0u_C_DA15_DA16	B12	BB04	62	0.18	BB04
16	6p0u_C_DA16_DC17	B-A	BA01	59	0.22	BA01
17	6p0u_C_DC17_DA18	A-B	AB01	29	0.20	AB01
18	6p0u_C_DA18_DG19	B-A	BA05	40	0.33	BA05
19	6p0u_C_DG19_DA20	BBB	BB00	10	0.41	BB00
20	6p0u_C_DA20_DC21	B-A	BA05	58	0.21	BA05
21	6p0u_C_DC21_DT22	NAN	NANT	0	0.46	BA08
22	6p0u_C_DT22_DA23	BBB	BB00	73	0.29	BB00
23	6p0u_C_DA23_DC24	BBB	BB01	73	0.22	BB01
24	6p0u_C_DC24_DA25	BBB	BB00	39	0.27	BB00
25	6p0u_C_DA25_DT26	BBB	BB01	80	0.17	BB01
26	6p0u_C_DT26_DT27	B-A	BA01	47	0.27	BA01
27	6p0u_D_DA1_DA2	BBB	BB00	73	0.25	BB00
28	6p0u_D_DA2_DT3	BBB	BB01	52	0.28	BB01
29	6p0u_D_DT3_DG4	BBB	BB00	72	0.30	BB00
30	6p0u_D_DG4_DT5	BBB	BB00	82	0.23	BB00
31	6p0u_D_DT5_DA6	B12	BB04	69	0.25	BB04
32	6p0u_D_DA6_DG7	BBB	BB00	82	0.23	BB00
33	6p0u_D_DG7_DT8	B12	BB04	58	0.35	BB04
34	6p0u_D_DT8_DC9	B-A	BA10	79	0.23	BA10
35	6p0u_D_DC9_DT10	AAA	AA00	48	0.26	AA00
36	6p0u_D_DT10_DG11	A-B	AB01	12	0.38	AB01
37	6p0u_D_DG11_DT12	BBB	BB00	35	0.34	BB00
38	6p0u_D_DT12_DT13	BBB	BB00	91	0.15	BB00
39	6p0u_D_DT13_DA14	B12	BB04	40	0.29	BB04
40	6p0u_D_DA14_DA15	BBB	BB00	60	0.19	BB00
41	6p0u_D_DA15_DA16	BBB	BB01	48	0.27	BB01
42	6p0u_D_DA16_DA17	BBB	BB01	85	0.22	BB01
43	6p0u_D_DA17_DA18	BBB	BB01	80	0.22	BB01
44	6p0u_D_DA18_DC19	B-A	BA05	36	0.33	BA05
45	6p0u_D_DC19_DA20	NAN	NANT	0	0.34	AA01
46	6p0u_D_DA20_DC21	NAN	NANT	0	0.48	AB04
47	6p0u_D_DC21_DA22	B12	BB04	19	0.25	BB04
48	6p0u_D_DA22_DA23	B-A	BA09	20	0.47	BA09
49	6p0u_D_DA23_DC24	NAN	NANT	0	0.57	AA02
50	6p0u_D_DC24_DA25	BBB	BB00	31	0.36	BB00
51	6p0u_D_DA25_DT26	BBB	BB01	83	0.15	BB01
52	6p0u_D_DT26_DT27	B-A	BA01	40	0.24	BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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A

A-B

B-A

B

IC

OPN

Z

N

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