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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Human DNA polymerase eta in a non-productive ternary complex with Ca2+ and dTTP oppositing cdA

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016m7t_P_DA.A1_DG2NANNANT00.69BA08
026m7t_P_DG2_DT3A-BAB02460.26AB02
036m7t_P_DT3_DG4BBBBB00430.23BB00
046m7t_P_DG4_DT5BBBBB00840.18BB00
056m7t_P_DT5_DG6BBBBB00170.25BB00
066m7t_P_DG6_DA7BBBBB00310.46BB00
076m7t_P_DA7_DG8NANNANT00.41BA10
086m7t_T_DA2_DT3NANNANT00.98OP21
096m7t_T_DC5_DT6A-BAB05440.31AB05
106m7t_T_DT6_DC7B-ABA05900.10BA05
116m7t_T_DC7_DA8A-BAB01230.35AB01
126m7t_T_DA8_DC9BBBBB00870.19BB00
136m7t_T_DC9_DA10NANNANT00.41BB07
146m7t_T_DA10_DC11BBBBB00400.32BB00
156m7t_T_DC11_DT.B12NANNANT01.05IC03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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