Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

ASFV pA104R in complex with double-strand DNA

Results of the assignment of 36 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016lmj_C_DT1_DG2BBBBB00510.53BB00
026lmj_C_DG2_DC3B-ABA17740.40BA17
036lmj_C_DC3_DT4NANNANT01.06OP29
046lmj_C_DT4_DT5NANNANT01.11OP13
056lmj_C_DT5_DA6NANNANT01.00BB15
066lmj_C_DA6_DT7NANNANT01.28OP13
076lmj_C_DT7_DC8NANNANT01.62OP31
086lmj_C_DC8_DA9A-BAB05380.51AB05
096lmj_C_DA9_DA10B12BB04170.31BB04
106lmj_C_DA10_DT11BBBBB01470.29BB01
116lmj_C_DT11_DT12BBBBB00200.53BB00
126lmj_C_DT12_DT13A-BAB02560.44AB02
136lmj_C_DT13_DG14miBBB13520.38BB13
146lmj_C_DG14_DT15BBwBB16470.59BB16
156lmj_C_DT15_DT16BBBBB00680.32BB00
166lmj_C_DT16_DG17BBBBB00790.24BB00
176lmj_C_DG17_DC18BBBBB00890.16BB00
186lmj_C_DC18_DA19B-ABA17660.41BA17
196lmj_D_DT1_DG2NANNANT00.71BB11
206lmj_D_DG2_DC3NANNANT00.46BA17
216lmj_D_DC3_DT4NANNANT01.32OP09
226lmj_D_DT4_DT5NANNANT02.36OP22
236lmj_D_DT5_DA6NANNANT00.34BB16
246lmj_D_DA6_DT7NANNANT01.70BB08
256lmj_D_DT7_DC8NANNANT01.61OP19
266lmj_D_DC8_DA9A-BAB05440.34AB05
276lmj_D_DA9_DA10miBBB10800.18BB10
286lmj_D_DA10_DT11NANNANT00.78AB02
296lmj_D_DT11_DT12BBBBB00590.30BB00
306lmj_D_DT12_DT13BBBBB00770.19BB00
316lmj_D_DT13_DG14B12BB04730.21BB04
326lmj_D_DG14_DT15BBwBB02270.30BB02
336lmj_D_DT15_DT16BBBBB01440.27BB01
346lmj_D_DT16_DG17BBBBB00610.33BB00
356lmj_D_DG17_DC18BBBBB00820.15BB00
366lmj_D_DC18_DA19B-ABA08610.21BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N