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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Thermus thermophilus initial transcription complex comprising sigma A and 5'-triphosphate RNA of 4 nt

Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016kql_G_DG4_DC5A-BAB05200.42AB05
026kql_G_DC5_DA6BBwBB03420.50BB03
036kql_G_DA6_DT7B-ABA05210.30BA05
046kql_G_DT7_DC8BBBBB01590.26BB01
056kql_G_DC8_DC9BBBBB00760.31BB00
066kql_G_DC9_DG10BBBBB01740.22BB01
076kql_G_DG10_DT11B-ABA05790.20BA05
086kql_G_DT11_DG12NANNANT00.38AA06
096kql_G_DG12_DA13AAAAA00710.22AA00
106kql_G_DA13_DG14NANNANT00.91OP06
116kql_G_DG14_DT15AAAAA00380.39AA00
126kql_G_DT15_DC16AAAAA00620.24AA00
136kql_G_DC16_DG17AAAAA00640.22AA00
146kql_G_DG17_DA18AAAAA00670.27AA00
156kql_G_DA18_DG19NANNANT00.41AB03
166kql_G_DG19_DG20NANNANT00.57AB03
176kql_H_DT1_DA2NANNANT01.00ZZS1
186kql_H_DA2_DT3NANNANT00.91OP13
196kql_H_DT3_DA4BBwBB16870.29BB16
206kql_H_DA4_DA5BBBBB00860.17BB00
216kql_H_DA5_DT6NANNANT01.17IC03
226kql_H_DT6_DG7NANNANT00.74OP16
236kql_H_DG7_DG8NANNANT01.19OP22
246kql_H_DG8_DG9BBBBB00830.27BB00
256kql_H_DG9_DA10B12BB04480.41BB04
266kql_H_DA10_DG11BBBBB00310.32BB00
276kql_H_DG11_DC12NANNANT01.13BB15
286kql_H_DC12_DT13NANNANT01.88BB11
296kql_H_DT13_DG14NANNANT02.48AB02
306kql_H_DG14_DT15NANNANT01.04OP30
316kql_H_DT15_DC16NANNANT00.57BB08
326kql_H_DC16_DA17NANNANT00.48BB10
336kql_H_DA17_DC18BBBBB00300.44BB00
346kql_H_DC18_DG19BBBBB00470.33BB00
356kql_H_DG19_DG20miBBB15500.30BB15
366kql_H_DG20_DA21B12BB05590.18BB05
376kql_H_DA21_DT22BBwBB03590.32BB03
386kql_H_DT22_DG23BBwBB03720.30BB03
396kql_H_DG23_DC24NANNANT00.63BB03
406kql_I_C5_G6AAAAA00770.22AA00
416kql_I_G6_A7AAAAA00870.15AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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