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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Mycobacterium tuberculosis RNA polymerase transcription initiation open complex with a chimeric ECF sigma factor sigH/E

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016jcy_G_DT3_DT4NANNANT01.34OP31
026jcy_G_DT6_DG7NANNANT00.79AB02
036jcy_G_DG7_DG8NANNANT01.48OP31
046jcy_G_DG8_DG9NANNANT00.85IC02
056jcy_G_DG9_DA10NANNANT00.45BA13
066jcy_G_DA10_DG11NANNANT00.61AB03
076jcy_G_DG11_DC12NANNANT00.84BA10
086jcy_G_DC12_DT13NANNANT01.03OP03
096jcy_G_DT13_DG14NANNANT01.78OP09
106jcy_G_DG14_DT15NANNANT01.10OP16
116jcy_G_DT15_DC16BBBBB00840.15BB00
126jcy_G_DC16_DA17BBBBB00770.25BB00
136jcy_G_DA17_DC18BBBBB01660.14BB01
146jcy_G_DC18_DG19BBBBB00420.30BB00
156jcy_G_DG19_DG20B12BB04810.27BB04
166jcy_G_DG20_DA21B12BB04410.40BB04
176jcy_G_DA21_DT22BBwBB02610.27BB02
186jcy_G_DT22_DG23miBBB15530.34BB15
196jcy_G_DG23_DC24B12BB04390.24BB04
206jcy_G_DC24_DA25B12BB04160.42BB04
216jcy_H_DT3_DG4NANNANT00.45BB07
226jcy_H_DG4_DC5miBBB12300.40BB12
236jcy_H_DC5_DA6BBBBB00230.56BB00
246jcy_H_DA6_DT7BBBBB00800.26BB00
256jcy_H_DT7_DC8B12BB04750.33BB04
266jcy_H_DC8_DC9miBBB10510.23BB10
276jcy_H_DC9_DG10miBBB10820.23BB10
286jcy_H_DG10_DT11B-ABA13120.36BA13
296jcy_H_DT11_DG12AAAAA08370.29AA08
306jcy_H_DG12_DA13AAAAA00900.15AA00
316jcy_H_DA13_DG14NANNANT00.85OP06
326jcy_H_DG14_DT15AAAAA00720.28AA00
336jcy_H_DT15_DC16AAAAA00830.19AA00
346jcy_H_DC16_DG17AAwAA10760.19AA10
356jcy_H_DG17_DA18AAAAA08210.36AA08
366jcy_H_DA18_DG19AAAAA08820.18AA08
376jcy_H_DG19_DG20AAAAA00780.26AA00
386jcy_H_DG20_DG21AAwAA01790.20AA01
396jcy_H_DG21_DT22AAAAA00650.26AA00
406jcy_I_C2_C3AAAAA08860.15AA08
416jcy_I_C3_U4AAAAA00830.21AA00
426jcy_I_U4_C5AAAAA00740.24AA00
436jcy_I_C5_G6AAAAA00660.25AA00
446jcy_I_G6_A7AAAAA00880.16AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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