DNATCO v3.2: results

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	6j4f_C_DA1_DG2	NAN	NANT	0	0.42	BB00
02	6j4f_C_DG2_DC3	B12	BB04	50	0.21	BB04
03	6j4f_C_DC3_DC4	B-A	BA01	52	0.22	BA01
04	6j4f_C_DC4_DT5	A-B	AB01	78	0.19	AB01
05	6j4f_C_DT5_DT6	BBB	BB01	92	0.17	BB01
06	6j4f_C_DT6_DT7	B-A	BA05	75	0.18	BA05
07	6j4f_C_DT7_DG8	A-B	AB01	55	0.30	AB01
08	6j4f_C_DG8_DA9	BBB	BB00	77	0.23	BB00
09	6j4f_C_DA9_DC10	BBB	BB01	80	0.21	BB01
10	6j4f_C_DC10_DC11	miB	BB15	77	0.26	BB15
11	6j4f_C_DC11_DA12	B12	BB04	62	0.37	BB04
12	6j4f_C_DA12_DG13	B12	BB04	90	0.15	BB04
13	6j4f_C_DG13_DC14	BBB	BB00	46	0.17	BB00
14	6j4f_C_DC14_DG15	NAN	NANT	0	0.44	BB10
15	6j4f_D_DT1_DC2	BBB	BB00	20	0.31	BB00
16	6j4f_D_DC2_DG3	BB2	BB07	90	0.14	BB07
17	6j4f_D_DG3_DC4	BBB	BB00	91	0.17	BB00
18	6j4f_D_DC4_DT5	BBB	BB01	23	0.20	BB01
19	6j4f_D_DT5_DG6	A-B	AB03	78	0.24	AB03
20	6j4f_D_DG6_DG7	BBB	BB00	74	0.23	BB00
21	6j4f_D_DG7_DT8	BBB	BB01	42	0.21	BB01
22	6j4f_D_DT8_DC9	BBB	BB00	10	0.28	BB00
23	6j4f_D_DC9_DA10	BBB	BB00	50	0.31	BB00
24	6j4f_D_DA10_DA11	BB2	BB07	62	0.20	BB07
25	6j4f_D_DA11_DA12	B-A	BA08	66	0.40	BA08
26	6j4f_D_DA12_DG13	BBB	BB01	52	0.25	BB01
27	6j4f_D_DG13_DG14	BBB	BB00	58	0.27	BB00
28	6j4f_D_DG14_DC15	BBB	BB00	70	0.14	BB00
29	6j4f_G_DA1_DG2	NAN	NANT	0	0.32	BB00
30	6j4f_G_DG2_DC3	B12	BB04	43	0.22	BB04
31	6j4f_G_DC3_DC4	B-A	BA05	12	0.45	BA05
32	6j4f_G_DC4_DT5	A-B	AB01	67	0.21	AB01
33	6j4f_G_DT5_DT6	BBB	BB01	59	0.16	BB01
34	6j4f_G_DT6_DT7	BBB	BB01	20	0.24	BB01
35	6j4f_G_DT7_DG8	A-B	AB03	76	0.36	AB03
36	6j4f_G_DG8_DA9	BBB	BB00	68	0.29	BB00
37	6j4f_G_DA9_DC10	BBB	BB01	61	0.23	BB01
38	6j4f_G_DC10_DC11	BBB	BB00	55	0.27	BB00
39	6j4f_G_DC11_DA12	B12	BB04	40	0.35	BB04
40	6j4f_G_DA12_DG13	NAN	NANT	0	0.42	BB15
41	6j4f_G_DG13_DC14	BBB	BB00	37	0.39	BB00
42	6j4f_G_DC14_DG15	BB2	BB07	70	0.29	BB07
43	6j4f_H_DT1_DC2	BBB	BB00	23	0.28	BB00
44	6j4f_H_DC2_DG3	B-A	BA13	29	0.41	BA13
45	6j4f_H_DG3_DC4	A-B	AB02	45	0.40	AB02
46	6j4f_H_DC4_DT5	BBB	BB00	72	0.34	BB00
47	6j4f_H_DT5_DG6	BB2	BB07	71	0.23	BB07
48	6j4f_H_DG6_DG7	BBB	BB00	83	0.17	BB00
49	6j4f_H_DG7_DT8	BBB	BB00	34	0.26	BB00
50	6j4f_H_DT8_DC9	BBB	BB00	59	0.22	BB00
51	6j4f_H_DC9_DA10	BBB	BB00	40	0.25	BB00
52	6j4f_H_DA10_DA11	BB2	BB07	71	0.23	BB07
53	6j4f_H_DA11_DA12	BBB	BB00	79	0.12	BB00
54	6j4f_H_DA12_DG13	BBB	BB01	68	0.22	BB01
55	6j4f_H_DG13_DG14	BBB	BB00	50	0.28	BB00
56	6j4f_H_DG14_DC15	B12	BB04	70	0.30	BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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A-B

B-A

IC

OPN

Z

N

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