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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of the AtWRKY2 domain

Results of the assignment of 56 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016j4f_C_DA1_DG2NANNANT00.42BB00
026j4f_C_DG2_DC3B12BB04500.21BB04
036j4f_C_DC3_DC4B-ABA01520.22BA01
046j4f_C_DC4_DT5A-BAB01780.19AB01
056j4f_C_DT5_DT6BBBBB01920.17BB01
066j4f_C_DT6_DT7B-ABA05750.18BA05
076j4f_C_DT7_DG8A-BAB01550.30AB01
086j4f_C_DG8_DA9BBBBB00770.23BB00
096j4f_C_DA9_DC10BBBBB01800.21BB01
106j4f_C_DC10_DC11miBBB15770.26BB15
116j4f_C_DC11_DA12B12BB04620.37BB04
126j4f_C_DA12_DG13B12BB04900.15BB04
136j4f_C_DG13_DC14BBBBB00460.17BB00
146j4f_C_DC14_DG15NANNANT00.44BB10
156j4f_D_DT1_DC2BBBBB00200.31BB00
166j4f_D_DC2_DG3BB2BB07900.14BB07
176j4f_D_DG3_DC4BBBBB00910.17BB00
186j4f_D_DC4_DT5BBBBB01230.20BB01
196j4f_D_DT5_DG6A-BAB03780.24AB03
206j4f_D_DG6_DG7BBBBB00740.23BB00
216j4f_D_DG7_DT8BBBBB01420.21BB01
226j4f_D_DT8_DC9BBBBB00100.28BB00
236j4f_D_DC9_DA10BBBBB00500.31BB00
246j4f_D_DA10_DA11BB2BB07620.20BB07
256j4f_D_DA11_DA12B-ABA08660.40BA08
266j4f_D_DA12_DG13BBBBB01520.25BB01
276j4f_D_DG13_DG14BBBBB00580.27BB00
286j4f_D_DG14_DC15BBBBB00700.14BB00
296j4f_G_DA1_DG2NANNANT00.32BB00
306j4f_G_DG2_DC3B12BB04430.22BB04
316j4f_G_DC3_DC4B-ABA05120.45BA05
326j4f_G_DC4_DT5A-BAB01670.21AB01
336j4f_G_DT5_DT6BBBBB01590.16BB01
346j4f_G_DT6_DT7BBBBB01200.24BB01
356j4f_G_DT7_DG8A-BAB03760.36AB03
366j4f_G_DG8_DA9BBBBB00680.29BB00
376j4f_G_DA9_DC10BBBBB01610.23BB01
386j4f_G_DC10_DC11BBBBB00550.27BB00
396j4f_G_DC11_DA12B12BB04400.35BB04
406j4f_G_DA12_DG13NANNANT00.42BB15
416j4f_G_DG13_DC14BBBBB00370.39BB00
426j4f_G_DC14_DG15BB2BB07700.29BB07
436j4f_H_DT1_DC2BBBBB00230.28BB00
446j4f_H_DC2_DG3B-ABA13290.41BA13
456j4f_H_DG3_DC4A-BAB02450.40AB02
466j4f_H_DC4_DT5BBBBB00720.34BB00
476j4f_H_DT5_DG6BB2BB07710.23BB07
486j4f_H_DG6_DG7BBBBB00830.17BB00
496j4f_H_DG7_DT8BBBBB00340.26BB00
506j4f_H_DT8_DC9BBBBB00590.22BB00
516j4f_H_DC9_DA10BBBBB00400.25BB00
526j4f_H_DA10_DA11BB2BB07710.23BB07
536j4f_H_DA11_DA12BBBBB00790.12BB00
546j4f_H_DA12_DG13BBBBB01680.22BB01
556j4f_H_DG13_DG14BBBBB00500.28BB00
566j4f_H_DG14_DC15B12BB04700.30BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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