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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structural basis of human clamp sliding on DNA

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016gis_D_DA1_DT2BBBBB01660.30BB01
026gis_D_DT2_DA3NANNANT00.44BB00
036gis_D_DA3_DC4miBBB10360.36BB10
046gis_D_DC4_DG5A-BAB03870.23AB03
056gis_D_DG5_DA6B12BB04650.28BB04
066gis_D_DA6_DT7miBBB10700.37BB10
076gis_D_DT7_DG8B12BB04550.26BB04
086gis_D_DG8_DG9B12BB04260.27BB04
096gis_D_DG9_DG10miBBB10850.20BB10
106gis_E_DC1_DC2B12BB04150.18BB04
116gis_E_DC2_DC3B-ABA08520.37BA08
126gis_E_DC3_DA4A-BAB03570.21AB03
136gis_E_DA4_DT5miBBB10420.23BB10
146gis_E_DT5_DC6BBBBB01390.33BB01
156gis_E_DC6_DG7BBBBB00950.15BB00
166gis_E_DG7_DT8BBBBB00830.24BB00
176gis_E_DT8_DA9miBBB10530.26BB10
186gis_E_DA9_DT10NANNANT00.55AA02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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