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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of human Brachyury (T) in complex with DNA

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016f58_C_DA2_DT3B-ABA05890.21BA05
026f58_C_DT3_DT4BBBBB01570.22BB01
036f58_C_DT4_DT5BBBBB01820.16BB01
046f58_C_DT5_DC6A-BAB03820.31AB03
056f58_C_DC6_DA7B12BB04790.28BB04
066f58_C_DA7_DC8B-ABA01260.24BA01
076f58_C_DC8_DA9A-BAB01760.14AB01
086f58_C_DA9_DC10B-ABA05700.25BA05
096f58_C_DC10_DC11B-ABA10660.29BA10
106f58_C_DC11_DT12A-BAB05480.20AB05
116f58_C_DT12_DA13BBBBB01380.40BB01
126f58_C_DA13_DG14BBBBB00560.28BB00
136f58_C_DG14_DG15BB2BB07580.34BB07
146f58_C_DG15_DT16NANNANT00.53BB03
156f58_C_DT16_DG17A-BAB05500.28AB05
166f58_C_DG17_DT18BBBBB00350.23BB00
176f58_C_DT18_DG19BBBBB00710.36BB00
186f58_C_DG19_DA20BB2BB07550.15BB07
196f58_C_DA20_DA21BBBBB01840.14BB01
206f58_C_DA21_DA22BBBBB01420.24BB01
216f58_C_DA22_DT23BBBBB01940.12BB01
226f58_C_DT23_DT24B-ABA05110.20BA05
236f58_D_DA1_DA2B12BB04180.27BB04
246f58_D_DA2_DT3B-ABA05770.20BA05
256f58_D_DT3_DT4BBBBB01530.21BB01
266f58_D_DT4_DT5BBBBB01780.16BB01
276f58_D_DT5_DC6BBBBB00620.22BB00
286f58_D_DC6_DA7B12BB04690.24BB04
296f58_D_DA7_DC8B-ABA01870.21BA01
306f58_D_DC8_DA9A-BAB03810.37AB03
316f58_D_DA9_DC10B-ABA01530.30BA01
326f58_D_DC10_DC11NANNANT00.47AA06
336f58_D_DC11_DT12A-BAB05770.19AB05
346f58_D_DT12_DA13BBBBB01290.41BB01
356f58_D_DA13_DG14BBBBB00550.24BB00
366f58_D_DG14_DG15B12BB04560.24BB04
376f58_D_DG15_DT16NANNANT00.39AA01
386f58_D_DT16_DG17A-BAB05480.28AB05
396f58_D_DG17_DT18BBBBB00840.20BB00
406f58_D_DT18_DG19BBBBB00550.41BB00
416f58_D_DG19_DA20BB2BB07770.14BB07
426f58_D_DA20_DA21BBBBB01880.14BB01
436f58_D_DA21_DA22BBBBB00280.21BB00
446f58_D_DA22_DT23BBBBB00780.14BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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