DNATCO v3.2: results

Crystal structure of human Brachyury (T) in complex with DNA

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	6f58_C_DA2_DT3	B-A	BA05	89	0.21	BA05
02	6f58_C_DT3_DT4	BBB	BB01	57	0.22	BB01
03	6f58_C_DT4_DT5	BBB	BB01	82	0.16	BB01
04	6f58_C_DT5_DC6	A-B	AB03	82	0.31	AB03
05	6f58_C_DC6_DA7	B12	BB04	79	0.28	BB04
06	6f58_C_DA7_DC8	B-A	BA01	26	0.24	BA01
07	6f58_C_DC8_DA9	A-B	AB01	76	0.14	AB01
08	6f58_C_DA9_DC10	B-A	BA05	70	0.25	BA05
09	6f58_C_DC10_DC11	B-A	BA10	66	0.29	BA10
10	6f58_C_DC11_DT12	A-B	AB05	48	0.20	AB05
11	6f58_C_DT12_DA13	BBB	BB01	38	0.40	BB01
12	6f58_C_DA13_DG14	BBB	BB00	56	0.28	BB00
13	6f58_C_DG14_DG15	BB2	BB07	58	0.34	BB07
14	6f58_C_DG15_DT16	NAN	NANT	0	0.53	BB03
15	6f58_C_DT16_DG17	A-B	AB05	50	0.28	AB05
16	6f58_C_DG17_DT18	BBB	BB00	35	0.23	BB00
17	6f58_C_DT18_DG19	BBB	BB00	71	0.36	BB00
18	6f58_C_DG19_DA20	BB2	BB07	55	0.15	BB07
19	6f58_C_DA20_DA21	BBB	BB01	84	0.14	BB01
20	6f58_C_DA21_DA22	BBB	BB01	42	0.24	BB01
21	6f58_C_DA22_DT23	BBB	BB01	94	0.12	BB01
22	6f58_C_DT23_DT24	B-A	BA05	11	0.20	BA05
23	6f58_D_DA1_DA2	B12	BB04	18	0.27	BB04
24	6f58_D_DA2_DT3	B-A	BA05	77	0.20	BA05
25	6f58_D_DT3_DT4	BBB	BB01	53	0.21	BB01
26	6f58_D_DT4_DT5	BBB	BB01	78	0.16	BB01
27	6f58_D_DT5_DC6	BBB	BB00	62	0.22	BB00
28	6f58_D_DC6_DA7	B12	BB04	69	0.24	BB04
29	6f58_D_DA7_DC8	B-A	BA01	87	0.21	BA01
30	6f58_D_DC8_DA9	A-B	AB03	81	0.37	AB03
31	6f58_D_DA9_DC10	B-A	BA01	53	0.30	BA01
32	6f58_D_DC10_DC11	NAN	NANT	0	0.47	AA06
33	6f58_D_DC11_DT12	A-B	AB05	77	0.19	AB05
34	6f58_D_DT12_DA13	BBB	BB01	29	0.41	BB01
35	6f58_D_DA13_DG14	BBB	BB00	55	0.24	BB00
36	6f58_D_DG14_DG15	B12	BB04	56	0.24	BB04
37	6f58_D_DG15_DT16	NAN	NANT	0	0.39	AA01
38	6f58_D_DT16_DG17	A-B	AB05	48	0.28	AB05
39	6f58_D_DG17_DT18	BBB	BB00	84	0.20	BB00
40	6f58_D_DT18_DG19	BBB	BB00	55	0.41	BB00
41	6f58_D_DG19_DA20	BB2	BB07	77	0.14	BB07
42	6f58_D_DA20_DA21	BBB	BB01	88	0.14	BB01
43	6f58_D_DA21_DA22	BBB	BB00	28	0.21	BB00
44	6f58_D_DA22_DT23	BBB	BB00	78	0.14	BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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Z

N

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