Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Hermes transposase deletion dimer complex with (C/G) DNA and Ca2+

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016dwy_B_DA1_DG2NANNANT00.32BB03
026dwy_B_DG2_DA3miBBB15550.36BB15
036dwy_B_DA3_DG4miBBB15410.31BB15
046dwy_B_DG4_DA5miBBB15730.30BB15
056dwy_B_DA5_DA6B-ABA0590.41BA05
066dwy_B_DA6_DC7B-ABA05150.35BA05
076dwy_B_DC7_DA8NANNANT00.62BB15
086dwy_B_DA8_DA9BBBBB00420.36BB00
096dwy_B_DA9_DC10NANNANT00.41BA09
106dwy_B_DC10_DA11A-BAB05690.31AB05
116dwy_B_DA11_DA12BBwBB11710.26BB11
126dwy_B_DA12_DC13NANNANT00.58BA10
136dwy_B_DC13_DA14A-BAB03300.26AB03
146dwy_B_DA14_DA15A-BAB03610.28AB03
156dwy_B_DA15_DG16NANNANT00.49AB03
166dwy_C_DC1_DT2NANNANT00.38AA06
176dwy_C_DT2_DT3AAwAA01310.44AA01
186dwy_C_DT3_DG4A-BAB01230.48AB01
196dwy_C_DG4_DT5B12BB04520.29BB04
206dwy_C_DT5_DT6NANNANT00.38BB03
216dwy_C_DT6_DG7A-BAB05160.23AB05
226dwy_C_DG7_DT8NANNANT00.43BB05
236dwy_C_DT8_DT9NANNANT00.58BB13
246dwy_C_DT9_DG10NANNANT00.39AA05
256dwy_C_DG10_DT11A-BAB03180.39AB03
266dwy_C_DT11_DT12B-ABA01120.21BA01
276dwy_C_DT12_DC13AAwAA01430.31AA01
286dwy_C_DC13_DT14NANNANT00.73AA11
296dwy_C_DT14_DC15NANNANT00.56AA11
306dwy_C_DC15_DT16NANNANT00.88IC03
316dwy_C_DT16_DG17NANNANT00.87BB13
326dwy_C_DG17_DG18NANNANT01.39OP01
336dwy_C_DG18_DG19NANNANT02.46ZZS2
346dwy_C_DG19_DT20NANNANT00.93IC07
356dwy_C_DT20_DC21NANNANT00.49BA13
366dwy_C_DC21_DA22A-BAB05110.34AB05
376dwy_C_DA22_DC23B12BB04180.29BB04
386dwy_C_DC23_DG24BBBBB00640.31BB00
396dwy_C_DG24_DC25B-ABA08590.33BA08
406dwy_D_DG1_DC2NANNANT00.63BB16
416dwy_D_DC2_DG3B-ABA08610.33BA08
426dwy_D_DG3_DT4BBBBB01250.19BB01
436dwy_D_DT4_DG5BBBBB00970.15BB00
446dwy_D_DG5_DA6B-ABA09280.39BA09
456dwy_D_DA6_DC7AAAAA04670.52AA04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N