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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 2 mM Mg2+ and 200 mM K+ for 120 s at 21 C (dataset 1)

Results of the assignment of 13 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016dop_B_A1_C2AAAAA00630.24AA00
026dop_B_C2_A3AAAAA00820.14AA00
036dop_B_A3_U.A4AAwAA01940.13AA01
046dop_B_A3_U.B4NANNANT00.59AA10
056dop_B_A3_U.C4AAwAA01940.14AA01
066dop_b_C.A5_G6NANNANT00.66BB12
076dop_b_C.B5_G6NANNANT00.66BB12
086dop_b_C.C5_G6NANNANT00.66BB12
096dop_C_DC1_DG2AAAAA00750.21AA00
106dop_C_DG2_DA3NANNANT00.44AB04
116dop_C_DA3_DT4BBBBB00150.38BB00
126dop_C_DT4_DG5B-ABA10400.46BA10
136dop_C_DG5_DT6A-BAB05520.36AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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