DNATCO v3.2: results

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	6bsh_D_DG1_DT2	NAN	NANT	0	0.89	AB02
02	6bsh_D_DT2_DA3	BBB	BB00	49	0.24	BB00
03	6bsh_D_DA3_DT4	B-A	BA10	81	0.30	BA10
04	6bsh_D_DT4_DG5	A-B	AB02	49	0.36	AB02
05	6bsh_D_DG5_DC6	A-B	AB03	43	0.39	AB03
06	6bsh_D_DC6_DC7	NAN	NANT	0	0.46	BB03
07	6bsh_D_DC7_DA8	NAN	NANT	0	0.43	BA08
08	6bsh_D_DA8_DC9	AAA	AA00	85	0.15	AA00
09	6bsh_D_DC9_DT10	AAA	AA00	87	0.21	AA00
10	6bsh_D_DT10_DA11	AAA	AA00	84	0.14	AA00
11	6bsh_D_DA11_DG12	NAN	NANT	0	0.45	AA10
12	6bsh_D_DG12_DT13	AAA	AA08	57	0.22	AA08
13	6bsh_D_DT13_DT14	A-B	AB01	37	0.30	AB01
14	6bsh_D_DT14_DA15	NAN	NANT	0	0.44	BA10
15	6bsh_D_DA15_DT16	AAA	AA00	92	0.14	AA00
16	6bsh_D_DT16_DT17	AAA	AA00	76	0.22	AA00
17	6bsh_D_DT17_DG18	AAA	AA00	83	0.16	AA00
18	6bsh_D_DG18_DT19	AAA	AA03	84	0.20	AA03
19	6bsh_D_DT19_DG20	AAA	AA00	67	0.25	AA00
20	6bsh_D_DG20_DG21	AAw	AA01	79	0.17	AA01
21	6bsh_D_DG21_DC22	AAA	AA03	86	0.19	AA03
22	6bsh_D_DC22_DC23	NAN	NANT	0	0.49	AA08
23	6bsh_R_G3_A4	NAN	NANT	0	1.31	OPS1
24	6bsh_R_G6_G7	NAN	NANT	0	0.36	AA06
25	6bsh_R_G7_C8	AAA	AA08	24	0.30	AA08
26	6bsh_R_C8_C9	AAA	AA00	65	0.25	AA00
27	6bsh_R_C9_A10	AAA	AA00	62	0.22	AA00
28	6bsh_R_A10_C11	AAA	AA08	96	0.10	AA08
29	6bsh_R_C11_A12	AAA	AA00	83	0.14	AA00
30	6bsh_R_A12_A13	AAA	AA00	81	0.13	AA00
31	6bsh_R_A13_U14	AAA	AA00	90	0.12	AA00
32	6bsh_R_U14_A15	AAA	AA08	81	0.18	AA08
33	6bsh_R_A15_A16	AAA	AA00	83	0.17	AA00
34	6bsh_R_A16_C17	AAA	AA08	84	0.19	AA08
35	6bsh_R_U18_A19	AAA	AA00	84	0.15	AA00
36	6bsh_R_A19_G20	AAA	AA00	89	0.08	AA00
37	6bsh_R_G20_U21	AAA	AA00	94	0.14	AA00
38	6bsh_R_U21_G22	AAA	AA00	85	0.23	AA00
39	6bsh_R_G22_G23	AAA	AA08	78	0.38	AA08
40	6bsh_R_G23_C24	AAA	AA08	57	0.35	AA08
41	6bsh_R_C24_A25	AAA	AA00	81	0.21	AA00
42	6bsh_R_A25_U26	AAw	AA06	85	0.21	AA06
43	6bsh_R_U26_A27	NAN	NANT	0	0.82	BB2S

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Color by conformation group (pyramids)

Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

Color by NtC (balls)

A-B

B-A

B

IC

OPN

Z

N

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