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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016b0q_E_DG2_DC3BBBBB00810.22BB00
026b0q_E_DC3_DG4B12BB04590.22BB04
036b0q_E_DG4_DT5BBBBB00640.40BB00
046b0q_E_DT5_DG6B-ABA13610.29BA13
056b0q_E_DG6_DG7A-BAB04590.34AB04
066b0q_E_DG7_DG8BBwBB02480.34BB02
076b0q_E_DG8_DA9B-ABA05700.34BA05
086b0q_E_DA9_DG10BBBBB00500.39BB00
096b0q_E_DG10_DT11B-ABA05830.13BA05
106b0q_E_DT11_DG12BBBBB01270.25BB01
116b0q_E_DG12_DT13BBBBB01410.25BB01
126b0q_E_DT13_DT14B-ABA05330.22BA05
136b0q_F_DA1_DA2BBBBB00820.20BB00
146b0q_F_DA2_DC3B-ABA05860.09BA05
156b0q_F_DC3_DA4B-ABA05500.33BA05
166b0q_F_DA4_DC5A-BAB01630.32AB01
176b0q_F_DC5_DT6BBBBB01740.28BB01
186b0q_F_DT6_DC7B-ABA01150.26BA01
196b0q_F_DC7_DC8A-BAB01680.23AB01
206b0q_F_DC8_DC9BBBBB01790.21BB01
216b0q_F_DC9_DA10BBBBB01810.15BB01
226b0q_F_DA10_DC11BBBBB00170.34BB00
236b0q_F_DC11_DG12BBBBB01710.14BB01
246b0q_F_DG12_DC13BBBBB00490.31BB00
256b0q_B_DG2_DC3BBBBB00780.23BB00
266b0q_B_DC3_DG4B12BB04540.21BB04
276b0q_B_DG4_DT5BBBBB00580.39BB00
286b0q_B_DT5_DG6B-ABA13700.23BA13
296b0q_B_DG6_DG7A-BAB05160.26AB05
306b0q_B_DG7_DG8BBBBB00760.20BB00
316b0q_B_DG8_DA9BBBBB01950.12BB01
326b0q_B_DA9_DG10BBBBB00430.47BB00
336b0q_B_DG10_DT11B-ABA05730.15BA05
346b0q_B_DT11_DG12BBBBB01240.27BB01
356b0q_B_DG12_DT13BBBBB00730.25BB00
366b0q_B_DT13_DT14B-ABA01410.25BA01
376b0q_C_DA2_DA3BBBBB00930.12BB00
386b0q_C_DA3_DC4B-ABA05860.07BA05
396b0q_C_DC4_DA5B-ABA05570.31BA05
406b0q_C_DA5_DC6A-BAB01780.28AB01
416b0q_C_DC6_DT7BBBBB01750.34BB01
426b0q_C_DT7_DC8B-ABA10510.35BA10
436b0q_C_DC8_DC9A-BAB05670.17AB05
446b0q_C_DC9_DC10BBBBB01780.27BB01
456b0q_C_DC10_DA11B-ABA05810.25BA05
466b0q_C_DA11_DC12BBBBB00160.41BB00
476b0q_C_DC12_DG13BBBBB00850.19BB00
486b0q_C_DG13_DC14B-ABA01660.18BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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