DNATCO v3.2: results

Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT

Results of the assignment of 48 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	6b0q_E_DG2_DC3	BBB	BB00	81	0.22	BB00
02	6b0q_E_DC3_DG4	B12	BB04	59	0.22	BB04
03	6b0q_E_DG4_DT5	BBB	BB00	64	0.40	BB00
04	6b0q_E_DT5_DG6	B-A	BA13	61	0.29	BA13
05	6b0q_E_DG6_DG7	A-B	AB04	59	0.34	AB04
06	6b0q_E_DG7_DG8	BBw	BB02	48	0.34	BB02
07	6b0q_E_DG8_DA9	B-A	BA05	70	0.34	BA05
08	6b0q_E_DA9_DG10	BBB	BB00	50	0.39	BB00
09	6b0q_E_DG10_DT11	B-A	BA05	83	0.13	BA05
10	6b0q_E_DT11_DG12	BBB	BB01	27	0.25	BB01
11	6b0q_E_DG12_DT13	BBB	BB01	41	0.25	BB01
12	6b0q_E_DT13_DT14	B-A	BA05	33	0.22	BA05
13	6b0q_F_DA1_DA2	BBB	BB00	82	0.20	BB00
14	6b0q_F_DA2_DC3	B-A	BA05	86	0.09	BA05
15	6b0q_F_DC3_DA4	B-A	BA05	50	0.33	BA05
16	6b0q_F_DA4_DC5	A-B	AB01	63	0.32	AB01
17	6b0q_F_DC5_DT6	BBB	BB01	74	0.28	BB01
18	6b0q_F_DT6_DC7	B-A	BA01	15	0.26	BA01
19	6b0q_F_DC7_DC8	A-B	AB01	68	0.23	AB01
20	6b0q_F_DC8_DC9	BBB	BB01	79	0.21	BB01
21	6b0q_F_DC9_DA10	BBB	BB01	81	0.15	BB01
22	6b0q_F_DA10_DC11	BBB	BB00	17	0.34	BB00
23	6b0q_F_DC11_DG12	BBB	BB01	71	0.14	BB01
24	6b0q_F_DG12_DC13	BBB	BB00	49	0.31	BB00
25	6b0q_B_DG2_DC3	BBB	BB00	78	0.23	BB00
26	6b0q_B_DC3_DG4	B12	BB04	54	0.21	BB04
27	6b0q_B_DG4_DT5	BBB	BB00	58	0.39	BB00
28	6b0q_B_DT5_DG6	B-A	BA13	70	0.23	BA13
29	6b0q_B_DG6_DG7	A-B	AB05	16	0.26	AB05
30	6b0q_B_DG7_DG8	BBB	BB00	76	0.20	BB00
31	6b0q_B_DG8_DA9	BBB	BB01	95	0.12	BB01
32	6b0q_B_DA9_DG10	BBB	BB00	43	0.47	BB00
33	6b0q_B_DG10_DT11	B-A	BA05	73	0.15	BA05
34	6b0q_B_DT11_DG12	BBB	BB01	24	0.27	BB01
35	6b0q_B_DG12_DT13	BBB	BB00	73	0.25	BB00
36	6b0q_B_DT13_DT14	B-A	BA01	41	0.25	BA01
37	6b0q_C_DA2_DA3	BBB	BB00	93	0.12	BB00
38	6b0q_C_DA3_DC4	B-A	BA05	86	0.07	BA05
39	6b0q_C_DC4_DA5	B-A	BA05	57	0.31	BA05
40	6b0q_C_DA5_DC6	A-B	AB01	78	0.28	AB01
41	6b0q_C_DC6_DT7	BBB	BB01	75	0.34	BB01
42	6b0q_C_DT7_DC8	B-A	BA10	51	0.35	BA10
43	6b0q_C_DC8_DC9	A-B	AB05	67	0.17	AB05
44	6b0q_C_DC9_DC10	BBB	BB01	78	0.27	BB01
45	6b0q_C_DC10_DA11	B-A	BA05	81	0.25	BA05
46	6b0q_C_DA11_DC12	BBB	BB00	16	0.41	BB00
47	6b0q_C_DC12_DG13	BBB	BB00	85	0.19	BB00
48	6b0q_C_DG13_DC14	B-A	BA01	66	0.18	BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ1

ε1

ζ1

α2

β2

γ2

δ2

χ1

χ2

μ

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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A

A-B

B-A

B

IC

OPN

Z

N

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