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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of hnRNPA2B1 in complex with RNA

Results of the assignment of 17 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015wwf_B_A1_A2NANNANT01.38ZZ2S
025wwf_B_A2_G3NANNANT01.30AA11
035wwf_B_G3_G4AAAAA00660.38AA00
045wwf_B_G4_A5AAAAA08750.28AA08
055wwf_B_A5_C6AAAAA00770.27AA00
065wwf_B_C6_G7ZZZZZ01940.16ZZ01
075wwf_B_G7_A8NANNANT01.05IC03
085wwf_B_A8_G9NANNANT01.48ZZ2S
095wwf_D_A1_A2NANNANT01.36ZZ2S
105wwf_D_A2_G3NANNANT01.33AAS1
115wwf_D_G3_G4NANNANT00.36AA10
125wwf_D_G4_A5AAAAA08790.22AA08
135wwf_D_A5_C6AAAAA00600.30AA00
145wwf_D_C6_G7ZZZZZ01930.11ZZ01
155wwf_D_G7_A8NANNANT01.23OP22
165wwf_D_A8_G9NANNANT00.90OP26
175wwf_D_G9_C10NANNANT00.80OP13

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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