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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA polymerase beta reactant complex with 8-oxoG:C at the primer terminus and incoming dCTP

Results of the assignment of 31 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015v1r_T_DC1_DC2NANNANT00.60BB02
025v1r_T_DC2_DG3BB2BB07220.32BB07
035v1r_T_DG3_DA4miBBB10550.21BB10
045v1r_T_DA4_DC5B-ABA05740.29BA05
055v1r_T_DC5_DG6NANNANT01.30OP21
065v1r_T_DG6_DC7B-ABA05740.21BA05
075v1r_T_DC7_DC8BBBBB01240.24BB01
085v1r_T_DC8_DG9B12BB04400.39BB04
095v1r_T_DG9_DC10BBBBB00880.16BB00
105v1r_T_DC10_DA11BBBBB00920.17BB00
115v1r_T_DA11_DT12BBBBB01820.19BB01
125v1r_T_DT12_DC13BBBBB00180.27BB00
135v1r_T_DC13_DA14BBBBB00450.28BB00
145v1r_T_DA14_DG15BBBBB00750.21BB00
155v1r_T_DG15_DC16B-ABA05610.25BA05
165v1r_P_DG1_DC2NANNANT00.44AB02
175v1r_P_DC2_DT3NANNANT00.41BB15
185v1r_P_DT3_DG4B12BB04440.32BB04
195v1r_P_DG4_DA5BBBBB00790.24BB00
205v1r_P_DA5_DT6BBBBB00920.15BB00
215v1r_P_DT6_DG7BBBBB00840.16BB00
225v1r_P_DG7_DC8B-ABA05920.10BA05
235v1r_P_DC8_DG9A-BAB01480.35AB01
245v1r_P_DG9_8OG.A10NANNANT00.54BA08
255v1r_P_DG9_8OG.B10NANNANT00.54BA08
265v1r_P_8OG.A10_DC.B11AAAAA00140.24AA00
275v1r_P_8OG.B10_DC.B11AAAAA00160.23AA00
285v1r_D_DG1_DT2BBBBB00790.26BB00
295v1r_D_DT2_DC3BBBBB00880.10BB00
305v1r_D_DC3_DG4B12BB04640.34BB04
315v1r_D_DG4_DG5B12BB04170.35BB04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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