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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 3nt RNA in complex with Rifampin

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015uhc_H_DT1_DA2NANNANT00.83IC05
025uhc_H_DA2_DT3NANNANT00.96OP13
035uhc_H_DT3_DA4BBwBB16680.27BB16
045uhc_H_DA4_DA5BBBBB00860.15BB00
055uhc_H_DA5_DT6OPNOP20370.63OP20
065uhc_H_DT6_DG7NANNANT01.50OP30
075uhc_H_DG7_DG8NANNANT01.26OP22
085uhc_H_DG8_DG9BBBBB00860.25BB00
095uhc_H_DG9_DA10B12BB04590.42BB04
105uhc_H_DA10_DG11miBBB12700.25BB12
115uhc_H_DG11_DC12NANNANT01.78IC04
125uhc_H_DC12_DT13NANNANT00.98BB12
135uhc_H_DT13_DG14NANNANT01.65IC01
145uhc_H_DG14_DT15NANNANT01.03OP16
155uhc_H_DT15_DC16NANNANT00.58BB02
165uhc_H_DC16_DA17miBBB10340.23BB10
175uhc_H_DA17_DC18BBBBB01560.27BB01
185uhc_H_DC18_DG19BBBBB00130.38BB00
195uhc_H_DG19_DG20BBBBB00700.22BB00
205uhc_H_DG20_DA21B12BB04870.21BB04
215uhc_H_DA21_DT22BBBBB00460.38BB00
225uhc_H_DT22_DG23BBBBB00720.37BB00
235uhc_G_DC5_DA6BBwBB03600.32BB03
245uhc_G_DA6_DT7BBwBB03260.54BB03
255uhc_G_DT7_DC8BBwBB16240.55BB16
265uhc_G_DC8_DC9BBBBB00790.21BB00
275uhc_G_DC9_DG10BBBBB00950.12BB00
285uhc_G_DG10_DT11BBBBB00880.22BB00
295uhc_G_DT11_DG12NANNANT00.47BA09
305uhc_G_DG12_DA13AAAAA08720.30AA08
315uhc_G_DA13_DG14NANNANT00.84OP06
325uhc_G_DG14_DT15AAAAA00410.30AA00
335uhc_G_DT15_DC16AAAAA00680.26AA00
345uhc_G_DC16_DC17AAAAA00840.28AA00
355uhc_G_DC17_DA18A-BAB05740.27AB05
365uhc_G_DA18_DG19B-ABA05350.41BA05
375uhc_I_G1_G2NANNANT00.83AA08
385uhc_I_G2_A3NANNANT00.61AA06

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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