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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of Mycobacterium tuberculosis transcription initiation complex containing 4nt RNA

Results of the assignment of 40 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015uh8_H_DT1_DA2NANNANT00.83IC05
025uh8_H_DA2_DT3NANNANT00.92OP13
035uh8_H_DT3_DA4BBwBB16660.27BB16
045uh8_H_DA4_DA5BBBBB00620.18BB00
055uh8_H_DA5_DT6OPNOP20420.61OP20
065uh8_H_DT6_DG7NANNANT01.31IC03
075uh8_H_DG7_DG8NANNANT01.24OP22
085uh8_H_DG8_DG9BBBBB00680.27BB00
095uh8_H_DG9_DA10B12BB04650.41BB04
105uh8_H_DA10_DG11miBBB12130.38BB12
115uh8_H_DG11_DC12NANNANT01.65BB03
125uh8_H_DC12_DT13NANNANT00.94BB12
135uh8_H_DT13_DG14NANNANT01.65IC01
145uh8_H_DG14_DT15NANNANT01.02OP16
155uh8_H_DT15_DC16NANNANT00.64BB02
165uh8_H_DC16_DA17miBBB10560.22BB10
175uh8_H_DA17_DC18BBBBB01720.25BB01
185uh8_H_DC18_DG19BBBBB00520.33BB00
195uh8_H_DG19_DG20BBBBB00640.26BB00
205uh8_H_DG20_DA21B12BB04870.19BB04
215uh8_H_DA21_DT22BBBBB00540.36BB00
225uh8_H_DT22_DG23BBBBB00510.34BB00
235uh8_G_DC5_DA6BBwBB03620.33BB03
245uh8_G_DA6_DT7BBwBB03320.51BB03
255uh8_G_DT7_DC8NANNANT00.54BB16
265uh8_G_DC8_DC9BBBBB00800.20BB00
275uh8_G_DC9_DG10BBBBB00960.11BB00
285uh8_G_DG10_DT11BBBBB00770.28BB00
295uh8_G_DT11_DG12NANNANT00.77BB12
305uh8_G_DG12_DA13AAAAA08340.33AA08
315uh8_G_DA13_DG14NANNANT00.82OP06
325uh8_G_DG14_DT15AAAAA00470.31AA00
335uh8_G_DT15_DC16AAAAA00790.19AA00
345uh8_G_DC16_DG17AAAAA00470.22AA00
355uh8_G_DG17_DA18AAAAA08760.15AA08
365uh8_G_DA18_DG19NANNANT00.47AA08
375uh8_G_DG19_DG20NANNANT00.39AA09
385uh8_I_U1_C2AAAAA00840.17AA00
395uh8_I_C2_G3AAAAA00730.22AA00
405uh8_I_G3_A4AAAAA00690.19AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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