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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

DNA Polymerase Mu Reactant Complex, Mn2+ (10 min)

Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015tyw_T_DC1_DG2A-BAB01370.21AB01
025tyw_T_DG2_DG3BBBBB00440.20BB00
035tyw_T_DG3_DC4BBBBB00570.23BB00
045tyw_T_DC4_DA5NANNANT01.13OP21
055tyw_T_DA5_DT6BBBBB00500.29BB00
065tyw_T_DT6_DA7B-ABA10680.42BA10
075tyw_T_DA7_DC8A-BAB05480.17AB05
085tyw_T_DC8_DG9BBBBB00160.45BB00
095tyw_P_DC1_DG2AAAAA00910.17AA00
105tyw_P_DG2_DT3AAAAA00810.21AA00
115tyw_P_DT3_DA.A4AAAAA00860.18AA00
125tyw_P_DT3_DA.B4AAAAA00760.19AA00
135tyw_P_DA.A4_DT.B5AAAAA08500.36AA08
145tyw_P_DA.B4_DT.B5AAAAA08500.36AA08
155tyw_D_DG1_DC2B-ABA05210.38BA05
165tyw_D_DC2_DC.A3A-BAB01280.34AB01
175tyw_D_DC2_DC.B3A-BAB01710.28AB01
185tyw_D_DC.A3_DG.A4NANNANT00.54AB02
195tyw_D_DC.B3_DG.B4BBBBB00750.24BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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