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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-p53R2)

Results of the assignment of 38 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015mg7_C_DA.B1_DG.B2BBBBB00750.27BB00
025mg7_C_DT.A1_DG.A2BBBBB00820.25BB00
035mg7_C_DG.A2_DA.A3BBBBB00690.23BB00
045mg7_C_DG.B2_DA.B3BBBBB00880.15BB00
055mg7_C_DA.A3_DC.A4BB2BB07600.35BB07
065mg7_C_DA.B3_DC.B4B12BB04800.21BB04
075mg7_C_DC.A4_DA.A5NANNANT00.61AB2S
085mg7_C_DC.B4_DA.B5NANNANT00.58AB2S
095mg7_C_DA.A5_DT.A6SYNBBS1250.34BBS1
105mg7_C_DA.B5_DT.B6SYNBBS1310.32BBS1
115mg7_C_DT.A6_DG.A7BB2BB07690.33BB07
125mg7_C_DT.B6_DG.B7BB2BB07390.35BB07
135mg7_C_DG.A7_DC.A8BBBBB01920.11BB01
145mg7_C_DG.B7_DC.B8BBBBB00940.15BB00
155mg7_C_DC.A8_DC.A9BBBBB00370.29BB00
165mg7_C_DC.B8_DC.B9B12BB04850.18BB04
175mg7_C_DC.A9_DC.A10B-ABA05880.15BA05
185mg7_C_DC.B9_DT.B10B-ABA01270.25BA01
195mg7_C_DC.A10_DA.A11A-BAB03740.30AB03
205mg7_C_DT.B10_DG.B11A-BAB01820.16AB01
215mg7_C_DA.A11_DG.A12BBBBB00860.24BB00
225mg7_C_DG.B11_DG.B12BBBBB00720.30BB00
235mg7_C_DG.A12_DG.A13BBBBB00820.22BB00
245mg7_C_DG.B12_DG.B13BBBBB00800.16BB00
255mg7_C_DG.A13_DC.A14BB2BB07590.34BB07
265mg7_C_DG.B13_DC.B14BBBBB00630.26BB00
275mg7_C_DC.A14_DA.A15NANNANT00.69AB1S
285mg7_C_DC.B14_DA.B15NANNANT00.58AB2S
295mg7_C_DA.A15_DT.A16SYNBBS1140.33BBS1
305mg7_C_DA.B15_DT.B16SYNBBS1290.34BBS1
315mg7_C_DT.A16_DG.A17BB2BB07690.32BB07
325mg7_C_DT.B16_DG.B17BB2BB07450.34BB07
335mg7_C_DG.A17_DT.A18BBBBB00890.20BB00
345mg7_C_DG.B17_DT.B18BBBBB01890.09BB01
355mg7_C_DT.A18_DC.A19B12BB04650.23BB04
365mg7_C_DT.B18_DC.B19BBBBB00410.29BB00
375mg7_C_DC.A19_DT.A20B-ABA05720.09BA05
385mg7_C_DC.B19_DA.B20B-ABA05800.18BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

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