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Conformers: ABBIImiBZICOPNSYNN
Click the Summary/Torsions/Similar/... tabs for more details.
New Insights into the Role of DNA Shape on Its Recognition by p53 Proteins (complex p53DBD-LHG1)

Results of the assignment of 19 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
step numberStep nameCANANtCconfalrmsd
015mct_C_DG.A1_DG2BBBBB00850.27 BB00
025mct_C_DG2_DG3BBBBB00810.24 BB00
035mct_C_DG3_DC4B12BB04720.25 BB04
045mct_C_DC4_IGU5NANNANT00.67 AA01
055mct_C_IGU5_DT6NANNANT00.51 BBS1
065mct_C_DT6_DG7BB2BB07580.36 BB07
075mct_C_DG7_DC8BBBBB00810.18 BB00
085mct_C_DC8_DC9B12BB04690.18 BB04
095mct_C_DC9_DC.A10B-ABA05790.11 BA05
105mct_C_DC.A10_DG.A11A-BAB01670.18 AB01
115mct_C_DG.A11_DG12BBBBB00840.27 BB00
125mct_C_DG12_DG13BBBBB00800.23 BB00
135mct_C_DG13_DC14B12BB04730.25 BB04
145mct_C_DC14_IGU15NANNANT00.76 BB2S
155mct_C_IGU15_DT16NANNANT00.51 BBS1
165mct_C_DT16_DG17BB2BB07460.36 BB07
175mct_C_DG17_DC18BBBBB00830.18 BB00
185mct_C_DC18_DC19B12BB04730.17 BB04
195mct_C_DC19_DC20B-ABA05780.12 BA05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA
Similarity of step to class averages

Download

Results as csv or json file.
Best NtC fitted to input structure.

Restraints

Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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