Click the Summary/Torsions/Similar/... tabs for more details.
Center view on step or molecule.
Show reference and contacts model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

TAR complex with HIV-1 Tat-AFF4-P-TEFb

Results of the assignment of 20 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015l1z_N_G21_A22AAwAA01290.39AA01
025l1z_N_A22_U23NANNANT00.89AA08
035l1z_N_U23_C24NANNANT01.47OP31
045l1z_N_C24_U25NANNANT01.88IC03
055l1z_N_U25_G26NANNANT00.99OP15
065l1z_N_G26_A27NANNANT00.79AA03
075l1z_N_A27_G28AAAAA00580.25AA00
085l1z_N_G28_C29AAAAA08430.52AA08
095l1z_N_C29_C30AAAAA08640.41AA08
105l1z_N_C30_U31AAuAA12170.71AA12
115l1z_N_U31_G32NANNANT00.32OP03
125l1z_N_G32_G33NANNANT00.90OP28
135l1z_N_G33_G34NANNANT00.98OP01
145l1z_N_G34_A35NANNANT02.37OP12
155l1z_N_A35_G36NANNANT00.69IC02
165l1z_N_G36_C37AAwAA05550.37AA05
175l1z_N_C37_U38AAwAA11620.42AA11
185l1z_N_U38_C39AAAAA00770.26AA00
195l1z_N_C39_U40AAuAA12400.48AA12
205l1z_N_U40_C41NANNANT00.60IC04

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Browse conformers

Return up to random steps in PDB structures ( include large structures )

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N