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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Teranry complex of human DNA polymerase iota(1-445) inserting dCMPNPP opposite template G in the presence of Mg2+

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015kt6_T_DT839_DG840NANNANT01.92OP14
025kt6_T_DG840_DG841SYNBBS1470.38BBS1
035kt6_T_DG841_DG842B-ABA09800.21BA09
045kt6_T_DG842_DG843AAwAA01180.37AA01
055kt6_T_DG843_DT844AAAAA00280.29AA00
065kt6_T_DT844_DC845A-BAB01100.32AB01
075kt6_T_DC845_DC846BBBBB00640.21BB00
085kt6_T_DC846_DT847NANNANT00.54BB15
095kt6_P_DA867_DG868BBBBB0190.36BB01
105kt6_P_DG868_DG869A-BAB03760.32AB03
115kt6_P_DG869_DA870B-ABA08370.27BA08
125kt6_P_DA870_DC871AAAAA00820.23AA00
135kt6_P_DC871_DC872AAAAA00730.23AA00
145kt6_P_DC872_DC873AAAAA00890.19AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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