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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Ternary complex crystal structure of DNA polymerase Beta with G:T mismatch at the primer terminus

Results of the assignment of 28 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015j2h_T_DC1_DC2BBBBB00500.52BB00
025j2h_T_DC2_DG3BB2BB07660.18BB07
035j2h_T_DG3_DA4B-ABA01150.24BA01
045j2h_T_DA4_DC5BBBBB01430.23BB01
055j2h_T_DC5_DA6NANNANT01.28OP21
065j2h_T_DA6_DG7B-ABA05550.29BA05
075j2h_T_DG7_DC8A-BAB01770.43AB01
085j2h_T_DC8_DG9B12BB04340.42BB04
095j2h_T_DG9_DC10BBBBB00710.17BB00
105j2h_T_DC10_DA11BBBBB00850.23BB00
115j2h_T_DA11_DT12BBBBB01860.18BB01
125j2h_T_DT12_DC13B-ABA05390.37BA05
135j2h_T_DC13_DA14A-BAB01840.18AB01
145j2h_T_DA14_DG15BBBBB01590.25BB01
155j2h_T_DG15_DC16B-ABA01100.33BA01
165j2h_P_DG1_DC2AAAAA00780.23AA00
175j2h_P_DC2_DT3A-BAB01790.20AB01
185j2h_P_DT3_DG4B-ABA08590.40BA08
195j2h_P_DG4_DA5NANNANT00.34BB00
205j2h_P_DA5_DT6BBBBB00760.23BB00
215j2h_P_DT6_DG7BBBBB00600.18BB00
225j2h_P_DG7_DC8B-ABA05960.08BA05
235j2h_P_DC8_DG9BBBBB01410.26BB01
245j2h_P_DG9_DT10B-ABA01160.48BA01
255j2h_D_DG1_DT2BBBBB00810.26BB00
265j2h_D_DT2_DC3B-ABA05830.25BA05
275j2h_D_DC3_DG4A-BAB01650.10AB01
285j2h_D_DG4_DG5BBBBB00490.23BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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