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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of Lin54 tesmin domain bound to DNA

Results of the assignment of 44 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015fd3_C_DG1_DA2BBBBB00650.19BB00
025fd3_C_DA2_DG3BBBBB00780.14BB00
035fd3_C_DG3_DT4BBBBB00770.30BB00
045fd3_C_DT4_DT5BBBBB00730.21BB00
055fd3_C_DT5_DT6B-ABA05930.14BA05
065fd3_C_DT6_DG7A-BAB03570.25AB03
075fd3_C_DG7_DA8BB2BB07660.27BB07
085fd3_C_DA8_DA9BBBBB00930.11BB00
095fd3_C_DA9_DA10BBBBB01680.23BB01
105fd3_C_DA10_DC11BBBBB01760.20BB01
115fd3_C_DC11_DT12BBBBB01620.23BB01
125fd3_D_DA2_DG3BBBBB00820.18BB00
135fd3_D_DG3_DT4BBBBB00830.19BB00
145fd3_D_DT4_DT5BBBBB00830.18BB00
155fd3_D_DT5_DT6BBBBB00810.25BB00
165fd3_D_DT6_DC7B-ABA05760.17BA05
175fd3_D_DC7_DA8A-BAB01490.24AB01
185fd3_D_DA8_DA9B12BB04620.23BB04
195fd3_D_DA9_DA10BBBBB00890.20BB00
205fd3_D_DA10_DC11B-ABA05910.21BA05
215fd3_D_DC11_DT12A-BAB03900.27AB03
225fd3_D_DT12_DC13BBBBB01920.11BB01
235fd3_H_DG1_DA2BBBBB00750.16BB00
245fd3_H_DA2_DG3BBBBB00770.11BB00
255fd3_H_DG3_DT4BBBBB00760.31BB00
265fd3_H_DT4_DT5BBBBB01830.14BB01
275fd3_H_DT5_DT6B-ABA05870.14BA05
285fd3_H_DT6_DG7A-BAB03540.26AB03
295fd3_H_DG7_DA8BB2BB07690.30BB07
305fd3_H_DA8_DA9BBBBB00950.11BB00
315fd3_H_DA9_DA10BBBBB01680.22BB01
325fd3_H_DA10_DC11BBBBB01760.19BB01
335fd3_H_DC11_DT12BBBBB01620.23BB01
345fd3_I_DA2_DG3BBBBB00860.18BB00
355fd3_I_DG3_DT4BBBBB00770.21BB00
365fd3_I_DT4_DT5BBBBB00790.22BB00
375fd3_I_DT5_DT6BBBBB00830.19BB00
385fd3_I_DT6_DC7B-ABA05840.17BA05
395fd3_I_DC7_DA8A-BAB01550.22AB01
405fd3_I_DA8_DA9B12BB04540.25BB04
415fd3_I_DA9_DA10BBBBB00850.22BB00
425fd3_I_DA10_DC11B-ABA05910.23BA05
435fd3_I_DC11_DT12A-BAB03900.26AB03
445fd3_I_DT12_DC13BBBBB01890.15BB01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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