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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of epoxyqueuosine reductase with a tRNA-TYR epoxyqueuosine-modified tRNA stem loop

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015d0b_F_G27_C28AAAAA00680.25AA00
025d0b_F_C28_A29AAAAA00880.17AA00
035d0b_F_A29_G30AAAAA00890.10AA00
045d0b_F_G30_A31AAAAA00930.12AA00
055d0b_F_A31_C32AAAAA08870.18AA08
065d0b_F_C32_U33AAAAA03770.18AA03
075d0b_F_U35_A36NANNANT00.75OP22
085d0b_F_A36_A37NANNANT01.36BB08
095d0b_F_A37_A38B-ABA16520.21BA16
105d0b_F_A38_U39AAAAA00790.22AA00
115d0b_F_U39_C40AAAAA00810.12AA00
125d0b_F_C40_U41AAAAA00920.12AA00
135d0b_F_U41_G42AAAAA00920.12AA00
145d0b_F_G42_C43AAAAA00940.16AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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