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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

monomer of TALE type homeobox transcription factor MEIS1 complexes with specific DNA

Results of the assignment of 39 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
015bng_L_DT26_DT27BBBBB00580.29BB00
025bng_L_DT27_DA28BBBBB00820.31BB00
035bng_L_DA28_DG29B-ABA05870.26BA05
045bng_L_DG29_DC30BBBBB00530.32BB00
055bng_L_DC30_DT31BBBBB01500.24BB01
065bng_L_DT31_DG32BBBBB01670.23BB01
075bng_L_DG32_DT33BBBBB00750.23BB00
085bng_L_DT33_DC34B12BB04330.26BB04
095bng_L_DC34_DA35BBBBB00520.43BB00
105bng_M_DT4_DG5B-ABA08630.28BA08
115bng_M_DG5_DA6NANNANT00.31AA01
125bng_M_DA6_DC7A-BAB05450.21AB05
135bng_M_DC7_DA8B12BB04760.35BB04
145bng_M_DA8_DG9BBBBB00870.18BB00
155bng_M_DG9_DC10BBBBB00640.25BB00
165bng_M_DC10_DT11BBBBB00660.23BB00
175bng_M_DT11_DA12BBBBB00660.34BB00
185bng_M_DA12_DA13B12BB04770.26BB04
195bng_M_DC15_DG16NANNANT01.04BB02
205bng_C_DG24_DA25NANNANT01.02BB12
215bng_C_DA25_DT26NANNANT01.11BB1S
225bng_C_DT26_DT27NANNANT00.71AA11
235bng_C_DT27_DA28A-BAB05280.52AB05
245bng_C_DA28_DG29BBBBB01780.20BB01
255bng_C_DG29_DC30BBBBB00570.31BB00
265bng_C_DC30_DT31BBBBB01640.24BB01
275bng_C_DT31_DG32BBBBB01620.21BB01
285bng_C_DG32_DT33B-ABA01310.30BA01
295bng_C_DT33_DC34A-BAB01470.30AB01
305bng_C_DC34_DA35BBBBB00520.35BB00
315bng_D_DT4_DG5A-BAB01810.18AB01
325bng_D_DG5_DA6BBBBB00890.16BB00
335bng_D_DA6_DC7BBBBB00640.39BB00
345bng_D_DC7_DA8B12BB04710.30BB04
355bng_D_DA8_DG9BBBBB00790.13BB00
365bng_D_DG9_DC10BBBBB00810.20BB00
375bng_D_DC10_DT11BBBBB00570.27BB00
385bng_D_DT11_DA12NANNANT00.41BB04
395bng_D_DA12_DA13BBBBB00790.28BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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