Conformers:
ABBIImiBZICOPNSYNN
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Structural variations and solvent structure of UGGGGU quadruplexes stabilized by Sr2+ ions
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Results of the assignment of 12 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.
Click a row in table or a step in viewer for analysis of results. Click column headers to sort data.
Define restraints for steps within Å cartesian RMSD, global sigma scaling factor or use per step sigma scaling.
| step number | Step name | CANA | NtC | confal | rmsd |
|---|---|---|---|---|---|
| 01 | 4rkv_A_U1001_G1002 | OPN | OP08 | 15 | 0.31 |
| 02 | 4rkv_A_G1002_G1003 | A-B | AB05 | 85 | 0.23 |
| 03 | 4rkv_A_G1003_G1004 | B-A | BA08 | 32 | 0.43 |
| 04 | 4rkv_A_G1004_G.A1005 | AAA | AA00 | 59 | 0.22 |
| 05 | 4rkv_A_G1004_G.B1005 | AAA | AA00 | 60 | 0.23 |
| 06 | 4rkv_A_G.A1005_U.A1006 | ZZZ | ZZ01 | 72 | 0.18 |
| 07 | 4rkv_A_G.B1005_U.B1006 | NAN | NANT | 0 | 1.26 |
| 08 | 4rkv_B_U2001_G2002 | OPN | OP08 | 29 | 0.32 |
| 09 | 4rkv_B_G2002_G2003 | A-B | AB05 | 75 | 0.28 |
| 10 | 4rkv_B_G2003_G2004 | B-A | BA01 | 7 | 0.36 |
| 11 | 4rkv_B_G2004_G2005 | AAA | AA00 | 77 | 0.19 |
| 12 | 4rkv_B_G2005_U2006 | NAN | NANT | 0 | 0.44 |
Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
|
step: Table of conformers |
| δ1 | ε1 | ζ1 | α2 | β2 | γ2 | δ2 | χ1 | χ2 | μ | NN | CC | |
| step_torsions | ||||||||||||
| ntC_average | ||||||||||||
| Δ torsions | ||||||||||||
| torsion scores |
| comments | step confal = NaN cartesian RMSD = NaN Å pseudorotation: NA details: NA |
Similarity of step to class averages
Download
Results as csv or json file.Best NtC fitted to input structure.
Restraints
Restraints file for REFMAC (steps with RMSD <= 0.5Å)Commands file for MMB (steps with RMSD <= 0.5Å)
Restraints file for Phenix (steps with RMSD <= 0.5Å) [?]
Definitions
Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.Download the papers
Description of DNATCO server:Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).
Browse conformers
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